WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000356815    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000356815 (Len=695)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000356815, Len=695):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRGGSYPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNP 80  
WD40-rpts                                              (_________________WD 1________________) 

Query       81 YSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSC 160 
WD40-rpts        (__________________WD 2__________________)(____________________WD 3___________

Query      161 GEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGM 240 
WD40-rpts      _________)(______________________WD 4______________________)                    

Query      241 VARFIPSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTG 320 
WD40-rpts          (________________WD 5_______________)     (__________________________WD 6___

Query      321 PRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPDLEVSETAME 400 
WD40-rpts      ______________________)  (_________________WD 7________________)                

Query      401 VDTPAEQFLQPSTSSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSDNNNEKLSPKPGTGEPVLSLH 480 
WD40-rpts                                                                                      

Query      481 YSTEGTTTSTIKLNFTDEWSSIASSSRGIGSHCKSEGQEESFVPQSSVQPPEGDSETKAPEESSEDVTKYQEGVSAENPV 560 
WD40-rpts                                                                                      

Query      561 ENHINITQSDKFTAKPLDSNSGERNDLNLDRSCGVPEESASSEKAKEPETSDQTSTESATNENNTNPEPQFQTEATGPSA 640 
WD40-rpts                                                                                      

Query      641 HEETSTRDSALQDTDDSDDDPVLIPGARYRAGPGDRRSAVARIQEFFRRRKERKE 695 
WD40-rpts                                                             



7 WD40-repeats found in QUERY=ENSP00000356815 (Len=695):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    41-79       8.95  484.52  1.8e-05       22.5%     45.45
  WD 2:  Seg  5    83-124      6.95  401.80  0.00024       37.5%     50.86
  WD 3:  Seg  9   125-170      6.19  370.19  0.00064       25.0%     45.03
  WD 4:  Seg 13   171-220      6.06  364.89  0.00075       25.0%     47.26
  WD 5:  Seg 17   245-281      7.48  423.45  0.00012       22.5%     40.64
  WD 6:  Seg 20   287-343      4.99  320.79  0.00295       17.5%      9.78
  WD 7:  Seg 23   346-384      3.89  275.16  0.01213       15.0%      4.30
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   41-79     -LKLEA---------T-----L-NVHDG------------------CVNTICWND--T-GEYILSGSDDTKLVISN
   WD 2   83-124    -RKVLT---------T-----IRSGHRA------------------NIFSAKFLPCTN-DKQIVSCSGDGVIFYTN
   WD 3  125-170    VEQDAE---------TNRQCQF-TCHYG------------------TTYEIMTVP-ND-PYTFLSCGEDGTVRWFD
   WD 4  171-220    TRIKTSCTKEDCKDDI-----L-INCRR------------------AATSVAICP--PIPYYLAVGCSDSSVRIYD
   WD 5  245-281    ---IPS---------H-----L-NNKSC------------------RVTSLCYSE--D-GQEILVSYSSDYIYLFD
   WD 6  287-343    -ARELK---------T-----P-SAEERREELRQPPVKRLRLRGDWSDTGPRARP--E-SERERDGEQSPNVSLMQ
   WD 7  346-384    -SDMLS---------R-----W-FEEAS------------------EVAQSNRGR--G-RSRPRGGTSQSDISTLP

   WD40 Template    TGECLR---------T-----L-SGHTS------------------GVTSVSFSP--D-GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019