Input parameters:
Query = ENSP00000356773 (Len=407)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000356773, Len=407):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRELCGHLNIIYDLSWSKDDHYILTSSSDGTARIWKNEINNTNTFRVLPHPSFVYTAKFHPAVRELVVTGCYDSMIRIWK 80
WD40-rpts (______________WD 1______________) (_________________WD 2_________________)
Query 81 VEMREDSAILVRQFDVHKSFINSLCFDTEGHHMYSGDCTGVIVVWNTYVKINDLEHSVHHWTINKEIKETEFKGIPISYL 160
WD40-rpts (_________________WD 3________________) (________________
Query 161 EIHPNGKRLLIHTKDSTLRIMDLRILVARKFVGAANYREKIHSTLTPCGTFLFAGSEDGIVYVWNPETGEQVAMYSDLPF 240
WD40-rpts _WD 4________________) (__________________WD 5_________________) (___________
Query 241 KSPIRDISYHPFENMVAFCAFGQNEPILLYIYDFHVAQQEAEMFKRYNGTFPLPGIHQSQDALCTCPKLPHQGSFQIDEF 320
WD40-rpts _________WD 6___________________) (_________________WD 7_____________
Query 321 VHTESSSTKMQLVKQRLETVTEVIRSCAAKVNKNLSFTSPPAVSSQQSKLKQSNMLTAQEILHQFGFTQTDSHFAEFNTC 400
WD40-rpts ____)(_________________WD 8_________________) (________________WD 9___________
Query 401 ILWWKKH 407
WD40-rpts ____)
9 WD40-repeats found in QUERY=ENSP00000356773 (Len=407):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 3-36 8.61 470.45 2.8e-05 27.5% 48.61
WD 2: Seg 4 41-80 7.30 416.32 0.00015 27.5% 57.53
WD 3: Seg 8 88-126 9.00 486.43 1.7e-05 30.0% 53.81
WD 4: Seg 12 144-182 8.08 448.50 5.6e-05 20.0% 55.77
WD 5: Seg 16 185-225 7.49 424.23 0.00012 30.0% 53.63
WD 6: Seg 20 229-273 5.71 350.61 0.00117 17.5% 58.37
WD 7: Seg 25 286-325 8.69 473.44 2.6e-05 12.5% 45.57
WD 8: Seg 28 326-365 8.26 455.74 4.5e-05 17.5% 32.73
WD 9: Seg 31 369-405 4.42 297.30 0.00612 7.5% 38.08
Multiple sequence alignment of 9 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 3-36 ------ELC--GHLNIIYDL--SWSKDDHYI-LTSSSDGT----ARIWK
WD 2 41-80 -NTNTFRVL--PHPSFVYTA--KFHPAVRELVVTGCYDSM----IRIWK
WD 3 88-126 -AILVRQFD--VHKSFINSL--CFDTEGHHM-YSGDCTGV----IVVWN
WD 4 144-182 -NKEIKETE--FKGIPISYL--EIHPNGKRL-LIHTKDST----LRIMD
WD 5 185-225 -ILVARKFV--GAANYREKIHSTLTPCGTFL-FAGSEDGI----VYVWN
WD 6 229-273 -GEQVAMYSDLPFKSPIRDI--SYHPFENMV-AFCAFGQNEPILLYIYD
WD 7 286-325 RYNGTFPLP--GIHQSQDAL--CTCPKLPHQ-GSFQIDEF----VHTES
WD 8 326-365 SSTKMQLVK--QRLETVTEV--IRSCAAKVN-KNLSFTSP----PAVSS
WD 9 369-405 -KLKQSNML--TAQEILHQF--GFTQTDSHF-A--EFNTC----ILWWK
WD40 Template TGECLRTLS--GHTSGVTSV--SFSPDGKRL-VSGSEDGT----IKVWD