WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000356773    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000356773 (Len=407)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000356773, Len=407):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRELCGHLNIIYDLSWSKDDHYILTSSSDGTARIWKNEINNTNTFRVLPHPSFVYTAKFHPAVRELVVTGCYDSMIRIWK 80  
WD40-rpts        (______________WD 1______________)    (_________________WD 2_________________)

Query       81 VEMREDSAILVRQFDVHKSFINSLCFDTEGHHMYSGDCTGVIVVWNTYVKINDLEHSVHHWTINKEIKETEFKGIPISYL 160 
WD40-rpts             (_________________WD 3________________)                 (________________

Query      161 EIHPNGKRLLIHTKDSTLRIMDLRILVARKFVGAANYREKIHSTLTPCGTFLFAGSEDGIVYVWNPETGEQVAMYSDLPF 240 
WD40-rpts      _WD 4________________)  (__________________WD 5_________________)   (___________

Query      241 KSPIRDISYHPFENMVAFCAFGQNEPILLYIYDFHVAQQEAEMFKRYNGTFPLPGIHQSQDALCTCPKLPHQGSFQIDEF 320 
WD40-rpts      _________WD 6___________________)            (_________________WD 7_____________

Query      321 VHTESSSTKMQLVKQRLETVTEVIRSCAAKVNKNLSFTSPPAVSSQQSKLKQSNMLTAQEILHQFGFTQTDSHFAEFNTC 400 
WD40-rpts      ____)(_________________WD 8_________________)   (________________WD 9___________

Query      401 ILWWKKH 407 
WD40-rpts      ____)  



9 WD40-repeats found in QUERY=ENSP00000356773 (Len=407):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-36       8.61  470.45  2.8e-05       27.5%     48.61
  WD 2:  Seg  4    41-80       7.30  416.32  0.00015       27.5%     57.53
  WD 3:  Seg  8    88-126      9.00  486.43  1.7e-05       30.0%     53.81
  WD 4:  Seg 12   144-182      8.08  448.50  5.6e-05       20.0%     55.77
  WD 5:  Seg 16   185-225      7.49  424.23  0.00012       30.0%     53.63
  WD 6:  Seg 20   229-273      5.71  350.61  0.00117       17.5%     58.37
  WD 7:  Seg 25   286-325      8.69  473.44  2.6e-05       12.5%     45.57
  WD 8:  Seg 28   326-365      8.26  455.74  4.5e-05       17.5%     32.73
  WD 9:  Seg 31   369-405      4.42  297.30  0.00612        7.5%     38.08
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    3-36     ------ELC--GHLNIIYDL--SWSKDDHYI-LTSSSDGT----ARIWK
   WD 2   41-80     -NTNTFRVL--PHPSFVYTA--KFHPAVRELVVTGCYDSM----IRIWK
   WD 3   88-126    -AILVRQFD--VHKSFINSL--CFDTEGHHM-YSGDCTGV----IVVWN
   WD 4  144-182    -NKEIKETE--FKGIPISYL--EIHPNGKRL-LIHTKDST----LRIMD
   WD 5  185-225    -ILVARKFV--GAANYREKIHSTLTPCGTFL-FAGSEDGI----VYVWN
   WD 6  229-273    -GEQVAMYSDLPFKSPIRDI--SYHPFENMV-AFCAFGQNEPILLYIYD
   WD 7  286-325    RYNGTFPLP--GIHQSQDAL--CTCPKLPHQ-GSFQIDEF----VHTES
   WD 8  326-365    SSTKMQLVK--QRLETVTEV--IRSCAAKVN-KNLSFTSP----PAVSS
   WD 9  369-405    -KLKQSNML--TAQEILHQF--GFTQTDSHF-A--EFNTC----ILWWK

   WD40 Template    TGECLRTLS--GHTSGVTSV--SFSPDGKRL-VSGSEDGT----IKVWD


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Last modified: 09 Jan 2019