WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000356451    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000356451 (Len=1115)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000356451, Len=1115):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKFNIRKVLDGLTAGSSSASQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQKILAVGTQTGA 80  
WD40-rpts                                                     (________________WD 1____________

Query       81 LRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAILHSLKFCRERVTFCHLPFQSKWLYVG 160 
WD40-rpts      ____)  (_________________WD 2________________)     (_________________WD 3_______

Query      161 TERGNIHIVNVESFTLSGYVIMWNKAIELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEAI 240 
WD40-rpts      _________)            (__________________WD 4__________________)  (_____________

Query      241 HSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHGKQLKDGKKPEPCKPILKVEFKTTRSGEPFIILSGGLSYDT 320 
WD40-rpts      ____WD 5________________)                                                       

Query      321 VGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPVT 400 
WD40-rpts                         (_________________WD 6_________________)                     

Query      401 CCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTSK 480 
WD40-rpts                        (____________________WD 7____________________)                

Query      481 VFEKSRNKDDRPNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVITEVIPMLEVRLLYEINDVETPEGE 560 
WD40-rpts          (____________________WD 8___________________)                               

Query      561 QPPPLPTPVGGSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLAVNSS 640 
WD40-rpts                                                                     (______________WD

Query      641 YGLVVFGNCNGIAMVDYLQKAVLLNLGTIELYGSNDPYRREPRSPRKSRQPSGAGLCDISEGTVVPEDRCKSPTSAKMSR 720 
WD40-rpts       9_____________)                                                                

Query      721 KLSLPTDLKPDLDVKDNSFSRSRSSSVTSIDKESREAISALHFCETFTRKTDSSPSPCLWVGTTLGTVLVIALNLPPGGE 800 
WD40-rpts                                                                                      

Query      801 QRLLQPVIVSPSGTILRLKGAILRMAFLDTTGCLIPPAYEPWREHNVPEEKDEKEKLKKRRPVSVSPSSSQEISENQYAV 880 
WD40-rpts                                                                                      

Query      881 ICSEKQAKVISLPTQNCAYKQNITETSFVLRGDIVALSNSICLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTF 960 
WD40-rpts                                                                                      

Query      961 CFTNNGQALYLVSPTEIQRLTYSQETCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRS 1040
WD40-rpts                                                                                      

Query     1041 LAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLGDLEERTAAMLSSAESFSKHAHEIMLKYKDKKWYQF 1115
WD40-rpts                                                                                 



9 WD40-repeats found in QUERY=ENSP00000356451 (Len=1115):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    48-85       6.02  363.21  0.00079       20.0%     43.65
  WD 2:  Seg  5    88-126      6.27  373.79  0.00057       22.5%     56.48
  WD 3:  Seg  9   132-170      5.80  354.29  0.00105       25.0%     55.30
  WD 4:  Seg 14   183-224      5.97  361.18  0.00084       30.0%     47.81
  WD 5:  Seg 17   227-265      6.68  390.42  0.00034       20.0%     54.22
  WD 6:  Seg 27   340-379      4.52  301.36  0.00539        7.5%     13.72
  WD 7:  Seg 33   419-464      5.65  347.93  0.00127       20.0%     39.43
  WD 8:  Seg 39   485-529      4.24  289.94  0.00768        7.5%     45.18
  WD 9:  Seg 45   624-656      3.07  241.30  0.03432       20.0%     44.72
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   48-85     --L------CKT-VRHGFPYQPSALAFDP-VQKILAVGTQTGALRLFG
   WD 2   88-126    -GV------ECY-CQHDSGAAVIQLQFLI-NEGALVSALADDTLHLWN
   WD 3  132-170    -PA------ILH-SLKFCRERVTFCHLPF-QSKWLYVGTERGNIHIVN
   WD 4  183-224    WNK------AIELSSKSHPGPVVHISDNPMDEGKLLIGFESGTVVLWD
   WD 5  227-265    -SK------KAD-YRYTYDEAIHSVAWHH-EGKQFICSHSDGTLTIWN
   WD 6  340-379    MDY------SIV-DFLTLCETPYPNDFQE-PYAVVVLLEKDLVLIDLA
   WD 7  419-464    VGARQKRQGYSK-KEWPINGGNWGLGAQS-YPEIIITGHADGSVKFWD
   WD 8  485-529    SRN-KDDRPNTD-IVDEDPYAIQIISWCP-ESRMLCIAGVSAHVIIYR
   WD 9  624-656    VG-------------GEPPQQITSLAVNS-SYGLVVFGNCNG-IAMVD

   WD40 Template    TGE------CLR-TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019