Input parameters:
Query = ENSP00000356345 (Len=287)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000356345, Len=287):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 XHEQVGSMGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRI 80
WD40-rpts
Query 81 YVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVPGTVVASASQKGTLIRLFDTQSKEKLVELRR 160
WD40-rpts (________________WD 1_______________) (________
Query 161 GTDPATLYCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFG 240
WD40-rpts __________WD 2_________________)
Query 241 RNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDICDDDDF 287
WD40-rpts
2 WD40-repeats found in QUERY=ENSP00000356345 (Len=287):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 10 112-148 3.23 248.21 0.02778 27.5% 47.28
WD 2: Seg 14 152-192 5.59 345.50 0.00137 27.5% 55.22
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 112-148 EKQLLVFPGHK--CGSLQL---VPGTVVASASQKGTLIRLFD
WD 2 152-192 KEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGT-VHIFA
WD40 Template GECLRTLSGHT--SGVTSVSFSPDGKRLVSGSEDGT-IKVWD