Input parameters:
Query = ENSP00000356132 (Len=500)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000356132, Len=500):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHK 80
WD40-rpts (_________________WD 1________________) (_________________WD 2___
Query 81 LVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFD 160
WD40-rpts _____________) (_________________WD 3_________________) (_________________WD
Query 161 RRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE 240
WD40-rpts 4________________)(_____________________WD 5____________________)(_____________
Query 241 PMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSI 320
WD40-rpts ___________WD 6________________________) (_________________WD 7_______________
Query 321 WAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALL 400
WD40-rpts _) (__________________WD 8__________________
Query 401 YLPIAPEVEDPEENPYGPPPDAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSK 480
WD40-rpts )
Query 481 KKQAGRPKGSKAGGAISELL 500
WD40-rpts
8 WD40-repeats found in QUERY=ENSP00000356132 (Len=500):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 14-52 7.30 416.07 0.00015 27.5% 45.91
WD 2: Seg 5 56-94 9.84 520.96 5.9e-06 35.0% 52.95
WD 3: Seg 9 98-137 5.87 357.13 0.00096 20.0% 50.76
WD 4: Seg 13 141-179 8.39 461.13 3.8e-05 17.5% 56.49
WD 5: Seg 17 180-226 8.32 458.17 4.2e-05 25.0% 47.72
WD 6: Seg 21 227-280 4.86 315.29 0.00350 25.0% 48.88
WD 7: Seg 25 284-322 6.38 378.38 0.00049 22.5% 54.33
WD 8: Seg 32 360-401 3.48 258.36 0.02035 17.5% 25.99
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 14-52 -PE-------EAD-------------GTLDCISM--ALTCTFNRWG--TLLAVGC-ND-GRIVIWD
WD 2 56-94 -RG-------IAK-------------IISAHIHP--VCSLCWSRDG--HKLVSAS-TD-NIVSQWD
WD 3 98-137 -GD-------CDQ-------------RFRFP-SP--ILKVQYHPRDQNKVLVCPM-KS-APVMLTL
WD 4 141-179 -KH-------VVL-------------PVDDDSDL--NVVASFDRRG--EYIYTGN-AK-GKILVLK
WD 5 180-226 TDSQDLVASFRVT-------------TGTSNTTA--IKSIEFARKG--SCFLINT-AD-RIIRVYD
WD 6 227-280 GRE-------ILTCGRDGEPEPMQKLQDLVNRTP--WKKCCFSGDG--EYIVAGSARQ-HALYIWE
WD 7 284-322 -GN-------LVK-------------ILHGTRGE-LLLDVAWHPVR--PIIASIS--S-GVVSIWA
WD 8 360-401 -SE-------PEQ-------------TGADAAEDEEVDVTSVDPIA--AFCSSDE-ELEDSKALLY
WD40 Template TGE-------CLR-------------TLSGHTSG--VTSVSFSPDG--KRLVSGS-ED-GTIKVWD