WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000356132    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000356132 (Len=500)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000356132, Len=500):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHK 80  
WD40-rpts                   (_________________WD 1________________)   (_________________WD 2___

Query       81 LVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFD 160 
WD40-rpts      _____________)   (_________________WD 3_________________)   (_________________WD

Query      161 RRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE 240 
WD40-rpts       4________________)(_____________________WD 5____________________)(_____________

Query      241 PMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSI 320 
WD40-rpts      ___________WD 6________________________)   (_________________WD 7_______________

Query      321 WAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALL 400 
WD40-rpts      _)                                     (__________________WD 8__________________

Query      401 YLPIAPEVEDPEENPYGPPPDAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSK 480 
WD40-rpts      )                                                                               

Query      481 KKQAGRPKGSKAGGAISELL 500 
WD40-rpts                          



8 WD40-repeats found in QUERY=ENSP00000356132 (Len=500):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-52       7.30  416.07  0.00015       27.5%     45.91
  WD 2:  Seg  5    56-94       9.84  520.96  5.9e-06       35.0%     52.95
  WD 3:  Seg  9    98-137      5.87  357.13  0.00096       20.0%     50.76
  WD 4:  Seg 13   141-179      8.39  461.13  3.8e-05       17.5%     56.49
  WD 5:  Seg 17   180-226      8.32  458.17  4.2e-05       25.0%     47.72
  WD 6:  Seg 21   227-280      4.86  315.29  0.00350       25.0%     48.88
  WD 7:  Seg 25   284-322      6.38  378.38  0.00049       22.5%     54.33
  WD 8:  Seg 32   360-401      3.48  258.36  0.02035       17.5%     25.99
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   14-52     -PE-------EAD-------------GTLDCISM--ALTCTFNRWG--TLLAVGC-ND-GRIVIWD
   WD 2   56-94     -RG-------IAK-------------IISAHIHP--VCSLCWSRDG--HKLVSAS-TD-NIVSQWD
   WD 3   98-137    -GD-------CDQ-------------RFRFP-SP--ILKVQYHPRDQNKVLVCPM-KS-APVMLTL
   WD 4  141-179    -KH-------VVL-------------PVDDDSDL--NVVASFDRRG--EYIYTGN-AK-GKILVLK
   WD 5  180-226    TDSQDLVASFRVT-------------TGTSNTTA--IKSIEFARKG--SCFLINT-AD-RIIRVYD
   WD 6  227-280    GRE-------ILTCGRDGEPEPMQKLQDLVNRTP--WKKCCFSGDG--EYIVAGSARQ-HALYIWE
   WD 7  284-322    -GN-------LVK-------------ILHGTRGE-LLLDVAWHPVR--PIIASIS--S-GVVSIWA
   WD 8  360-401    -SE-------PEQ-------------TGADAAEDEEVDVTSVDPIA--AFCSSDE-ELEDSKALLY

   WD40 Template    TGE-------CLR-------------TLSGHTSG--VTSVSFSPDG--KRLVSGS-ED-GTIKVWD


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Last modified: 09 Jan 2019