WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000356064    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000356064 (Len=1543)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000356064, Len=1543):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQRINFNLRG 80  
WD40-rpts                            (________________WD 1_______________)(____________________

Query       81 HNSEVVLVRWNEPYQKLATCDADGGIFVWIQYEGRWSVELVNDRGAQVSDFTWSHDGTQALISYRDGFVLVGSVSGQRHW 160 
WD40-rpts      ___WD 2______________________)(___________________WD 3__________________)   (___

Query      161 SSEINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHESDGVLGMSWNYPIFLVEDSSESDTDSDDYAPP 240 
WD40-rpts      ______________WD 4________________)   (_________________WD 5________________)   

Query      241 QDGPAAYPIPVQNIKPLLTVSFTSGDISLMNNYDDLSPTVIRSGLKEVVAQWCTQGDLLAVAGMERQTQLGELPNGPLLK 320 
WD40-rpts                                     (__________________WD 6_________________)        

Query      321 SAMVKFYNVRGEHIFTLDTLVQRPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIASTLREDKDVSKLTL 400 
WD40-rpts                                                (__________________________WD 7_______

Query      401 PPRLCSYLSTAFIPTIKPPIPDPNNMRDFVSYPSAGNERLHCTMKRTEDDPEVGGPCYTLYLEYLGGLVPILKGRRISKL 480 
WD40-rpts      ___________________)                                                            

Query      481 RPEFVIMDPRTDSKPDEIYGNSLISTVIDSCNCSDSSDIELSDDWAAKKSPKISRASKSPKLPRISIEARKSPKLPRAAQ 560 
WD40-rpts                                                                                      

Query      561 ELSRSPRLPLRKPSVGSPSLTRREFPFEDITQHNYLAQVTSNIWGTKFKIVGLAAFLPTNLGAVIYKTSLLHLQPRQMTI 640 
WD40-rpts                                                                                      

Query      641 YLPEVRKISMDYINLPVFNPNVFSEDEDDLPVTGASGVPENSPPCTVNIPIAPIHSSAQAMSPTQSIGLVQSLLANQNVQ 720 
WD40-rpts                                                                                      

Query      721 LDVLTNQTTAVGTAEHAGDSATQYPVSNRYSNPGQVIFGSVEMGRIIQNPPPLSLPPPPQGPMQLSTVGHGDRDHEHLQK 800 
WD40-rpts                                                                                      

Query      801 SAKALRPTPQLAAEGDAVVFSAPQEVQVTKINPPPPYPGTIPAAPTTAAPPPPLPPPQPPVDVCLKKGDFSLYPTSVHYQ 880 
WD40-rpts                                                                                      

Query      881 TPLGYERITTFDSSGNVEEVCRPRTRMLCSQNTYTLPGPGSSATLRLTATEKKVPQPCSSATLNRLTVPRYSIPTGDPPP 960 
WD40-rpts                                                                                      

Query      961 YPEIASQLAQGRGAAQRSDNSLIHATLRRNNREATLKMAQLADSPRAPLQPLAKSKGGPGGVVTQLPARPPPALYTCSQC 1040
WD40-rpts                                                                                      

Query     1041 SGTGPSSQPGASLAHTASASPLASQSSYSLLSPPDSARDRTDYVNSAFTEDEALSQHCQLEKPLRHPPLPEAAVTLKRPP 1120
WD40-rpts                                                                                      

Query     1121 PYQWDPMLGEDVWVPQERTAQTSGPNPLKLSSLMLSQGQHLDVSRLPFISPKSPASPTATFQTGYGMGVPYPGSYNNPPL 1200
WD40-rpts                                                                                      

Query     1201 PGVQAPCSPKDALSPTQFAQQEPAVVLQPLYPPSLSYCTLPPMYPGSSTCSSLQLPPVALHPWSSYSACPPMQNPQGTLP 1280
WD40-rpts                                                                                      

Query     1281 PKPHLVVEKPLVSPPPADLQSHLGTEVMVETADNFQEVLSLTESPVPQRTEKFGKKNRKRLDSRAEEGSVQAITEGKVKK 1360
WD40-rpts                                                                                      

Query     1361 EARTLSDFNSLISSPHLGREKKKVKSQKDQLKSKKLNKTNEFQDSSESEPELFISGDELMNQSQGSRKGWKSKRSPRAAG 1440
WD40-rpts                                                                                      

Query     1441 ELEEAKCRRASEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFGRIDGSAYILD 1520
WD40-rpts                                                                                      

Query     1521 FQYPFSAVQAFAVALANVTQRLK 1543
WD40-rpts                             



7 WD40-repeats found in QUERY=ENSP00000356064 (Len=1543):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    23-59       3.04  240.41  0.03525       20.0%     37.29
  WD 2:  Seg  5    60-110      7.08  407.14  0.00020       35.0%     43.39
  WD 3:  Seg  8   111-153      5.61  346.49  0.00133       20.0%     56.56
  WD 4:  Seg 12   157-195      6.29  374.62  0.00056       22.5%     53.14
  WD 5:  Seg 16   199-237      4.88  316.16  0.00341       17.5%     29.66
  WD 6:  Seg 21   272-312      3.89  275.40  0.01204       10.0%     37.13
  WD 7:  Seg 29   363-420      3.21  247.15  0.02870       17.5%     13.16
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   23-59     KGR---VPK-------------SEKEK------------------PVCRRRYYEEG-WLATGNGRGVVGVTF
   WD 2   60-110    TSS---HCRRDRSTPQRINFNLRGHNS------------------EVVLVRWNEPYQKLATCDADGGIFVWI
   WD 3  111-153    QYEGRWSVE-----------LVNDRGA------------------QVSDFTWSHDGTQALISYRDGFVLVGS
   WD 4  157-195    -QR---HWS-----------SEINLES------------------QITCGIWTPDDQQVLFGTADGQVIVMD
   WD 5  199-237    -RM---LAH-----------VLLHESD------------------GVLGMSWNYPIFLVEDSSESDTDSDDY
   WD 6  272-312    NYD---DLS----------PTVIRSGL------------------KEVVAQWCTQGDLLAVAGMERQTQLGE
   WD 7  363-420    PAL---YVV-----------RVEHRVSSLQLLCQQAIASTLREDKDVSKLTLPPRLCSYLSTAFIPTIKPPI

   WD40 Template    TGE---CLR-----------TLSGHTS------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019