WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000355205    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000355205 (Len=1556)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000355205, Len=1556):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASELGARDDGGCTELAKPLYLQYLERALRLDHFLRQTSAIFNRNISSDDSEDGLDDSNPLLPQSGDPLIQVKEEPPNSL 80  
WD40-rpts                                                                                      

Query       81 LGETSGAGSSGMLNTYSLNGVLQSESKCDKGNLYNFSKLKKSRKWLKSILLSDESSEADSQSEDDDEEELNLSREELHNM 160 
WD40-rpts                                                                                      

Query      161 LRLHKYKKLHQNKYSKDKELQQYQYYSAGLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEES 240 
WD40-rpts                                                                                      

Query      241 PRRHHHQTKVFAKFSHDAPPPGTKKKHLSIEQLNARRRKVWLSIVKKELPKANKQKASARNLFLTNSRKLAHQCMKEVRR 320 
WD40-rpts                                                                                      

Query      321 AALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMS 400 
WD40-rpts                                                                                      

Query      401 RKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAA 480 
WD40-rpts                                                                                      

Query      481 LRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHL 560 
WD40-rpts                                                                                      

Query      561 AERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKY 640 
WD40-rpts                                                                                      

Query      641 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESH 720 
WD40-rpts                                                                                      

Query      721 AENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQN 800 
WD40-rpts                                                                                      

Query      801 TTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYHISKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRK 880 
WD40-rpts                                                                                      

Query      881 GINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFP 960 
WD40-rpts                                                                                      

Query      961 NLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKE 1040
WD40-rpts                                                                                      

Query     1041 GGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRV 1120
WD40-rpts                                                                                      

Query     1121 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1200
WD40-rpts                         (_________________________WD 1_________________________)     

Query     1201 TVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRL 1280
WD40-rpts                                                                                      

Query     1281 RQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPFVPSADNSNLSADGDDSFISVDSAMPSPFSEI 1360
WD40-rpts                                                                                      

Query     1361 SISSELHTGSIPLDESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSRGRPKGSGST 1440
WD40-rpts                                                                                      

Query     1441 AKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRPAGLADFGPSSASSPLSSPLSK 1520
WD40-rpts                                                                                      

Query     1521 GNNVPGNPKNLHMTSSLAPDSLVRKQGKGTNPSGGR 1556
WD40-rpts                                          



1 WD40-repeats found in QUERY=ENSP00000355205 (Len=1556):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10  1140-1195     2.90  234.62  0.04205       20.0%     30.87
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1 1140-1195   RKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAAD-TVIFYD

   WD40 Template    TGECLRTLSGHTS-----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019