WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000355148    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000355148 (Len=426)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000355148, Len=426):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASPPRCSPTAHDRECKLPPPSAPASEYCPGKLSWGTMARALGRFKLSIPHTHLLATLDPLALDREPPPHLLPEKHQVPE 80  
WD40-rpts                                             (____________________WD 1________________

Query       81 KLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSGSYDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRV 160 
WD40-rpts      ____)      (_________________WD 2________________)   (_________________WD 3_____

Query      161 IAASYDKTVRAWDLETGKLLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDP 240 
WD40-rpts      ____________)   (_________________WD 4________________)(___________________WD 5_

Query      241 DSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGH 320 
WD40-rpts      _________________)    (_________________WD 6________________)         (_________

Query      321 EGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPL 400 
WD40-rpts      ________WD 7________________)   (_________________WD 8________________)         

Query      401 VIKYKKAVGLKLKQEKKEAYLKLKQG 426 
WD40-rpts                                



8 WD40-repeats found in QUERY=ENSP00000355148 (Len=426):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    40-85       6.78  394.82  0.00030       12.5%     39.07
  WD 2:  Seg  5    92-130      9.85  521.38  5.8e-06       40.0%     50.90
  WD 3:  Seg  9   134-173      8.39  461.42  3.8e-05       27.5%     56.89
  WD 4:  Seg 13   177-215      7.00  403.97  0.00022       37.5%     54.70
  WD 5:  Seg 17   216-258      8.68  473.33  2.6e-05       37.5%     51.50
  WD 6:  Seg 21   263-301      8.51  466.26  3.2e-05       22.5%     51.34
  WD 7:  Seg 25   311-349      9.78  518.48  6.4e-06       37.5%     51.53
  WD 8:  Seg 29   353-391      9.66  513.73  7.4e-06       32.5%     56.38
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   40-85     RALGRFKLS---IPHTHLLAT-LDPLALDREPPPHLLPEK-HQVPEKLIWG
   WD 2   92-130    -K------I---PFKILSGHE-HAVSTCHFCVDDTKLLSG-SYDCTVKLWD
   WD 3  134-173    -G------S---VVRDFEHRPKAPVVECSITGDSSRVIAA-SYDKTVRAWD
   WD 4  177-215    -G------K---LLWKV-RYD-TFIVSCKFSPDGKYVVSGFDVDHGICIMD
   WD 5  216-258    AE------NITTVSVIKDHHT-RSITSCCFDPDSQRVASV-SLDRCIKIWD
   WD 6  263-301    -A------T---LLTITKAHS-NAISNCCFTFSGHFLCTS-SWDKNLKIWN
   WD 7  311-349    -G------A---CVTLMQGHE-GSVSSCHFARDSSFLISG-GFDRTVAIWD
   WD 8  353-391    -G------Y---RKLSLKGHN-DWVMDVAISNNKKWILSA-SKDRTMRLWN

   WD40 Template    TG------E---CLRTLSGHT-SGVTSVSFSPDGKRLVSG-SEDGTIKVWD


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Last modified: 09 Jan 2019