WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000355114    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000355114 (Len=453)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000355114, Len=453):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARKVVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETSYSRVLHGYAAQQLPSLLK 80  
WD40-rpts                                                                                    (_

Query       81 EREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGD 160 
WD40-rpts      _______________WD 1________________)             (_________________WD 2_________

Query      161 NPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKAL 240 
WD40-rpts      ________)    (________________WD 3________________)                         (___

Query      241 KDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVS 320 
WD40-rpts      ________________WD 4___________________)     (_________________WD 5_____________

Query      321 FLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGW 400 
WD40-rpts      ___)   (_________________WD 6________________)(___________________WD 7__________

Query      401 LNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS 453 
WD40-rpts      ________)                                            



7 WD40-repeats found in QUERY=ENSP00000355114 (Len=453):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    79-116      4.43  297.55  0.00607       17.5%     44.30
  WD 2:  Seg  5   130-169      6.06  364.90  0.00075       10.0%     38.01
  WD 3:  Seg  8   174-211      7.19  411.81  0.00018       27.5%     49.13
  WD 4:  Seg 13   237-280      7.75  434.76  8.6e-05       20.0%     42.28
  WD 5:  Seg 16   286-324      5.18  328.53  0.00232       10.0%     44.85
  WD 6:  Seg 20   328-366      4.99  320.66  0.00297       15.0%     49.97
  WD 7:  Seg 24   367-409      5.30  333.43  0.00200       15.0%     21.02
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   79-116    -LKE----REFHLGTLNKVFASQWL-NHRQVVCGTKC-NTLFVV----D
   WD 2  130-169    -DRE----PGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIY----R
   WD 3  174-211    -DPV----CVGDDGHKDWIFSIAWISD-TMAVSGSRD-GSMGLW----E
   WD 4  237-280    HKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLD-GYFHLW----K
   WD 5  286-324    -SKL----LSTKLPYCRENVCLAYGSEWSVYAVGSQA-HVSFLD----P
   WD 6  328-366    -SYN----VKSVCSRERGSGIRSVSFYEHIITVGTGQ-GSLLFY----D
   WD 7  367-409    -IRA----QRFLEERLSACYGSKPRLAGENLKLTTGK-GWLNHDETWRN

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSED-GTIKVW----D


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Last modified: 09 Jan 2019