WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000353128    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000353128 (Len=463)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000353128, Len=463):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQQQTGSRKRKAPAVEAGAGSSSSQGLAAADGEGPLLPKKQKRPATRRRLVHYLKGREVGARGPAGLQGFEGELRGYAV 80  
WD40-rpts                                                                                      

Query       81 QRLPELLTERQLDLGTLNKVFASQWLNARQVVCGTKCNTLFVVDVQSGHITRIPLMRDKEAGLAQAHQGCGIHAIELNPS 160 
WD40-rpts            (________________WD 1________________)                  (_______________WD

Query      161 KTLLATGGENPNSLAIYQLPTLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDMFNGSIAWHSEVGLP 240 
WD40-rpts       2_______________)     (________________WD 3________________)                   

Query      241 VYAHIRPRDVEAIPRASTNPSNRKVRALAFSGKNQELGAVSLDGYFHLWKARSTLSRLLSIRLPYCRENVCLTYCDELSL 320 
WD40-rpts                    (_______________WD 4_______________)     (_________________WD 5___

Query      321 YAVGSQSHVSFLDPRQRQQNIRPLCSREGGTGVRSLSFYQHIITVGTGHGSLLFYDIRAQKFLEERASSSLDSMPGPAGR 400 
WD40-rpts      _____________)   (_________________WD 6________________)   (_________________WD 

Query      401 KLKLACGRGWLNQDDVWVNYFGGMGEFPNALYTHCYNWPEMKLFVAGGPLPSGLHGNYAGLWS 463 
WD40-rpts      7________________)____________________WD 8____________________)



8 WD40-repeats found in QUERY=ENSP00000353128 (Len=463):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    87-124      4.48  299.75  0.00567       17.5%     44.88
  WD 2:  Seg  6   143-178      5.11  325.61  0.00254       15.0%     47.09
  WD 3:  Seg  9   184-221      7.83  438.10  7.7e-05       35.0%     48.71
  WD 4:  Seg 16   255-290      7.43  421.56  0.00013       20.0%     51.51
  WD 5:  Seg 20   296-334      7.14  409.47  0.00019        7.5%     53.13
  WD 6:  Seg 24   338-376      6.31  375.23  0.00055       20.0%     49.99
  WD 7:  Seg 28   380-418      3.58  262.41  0.01797       10.0%     19.56
  WD 8:  Seg 31   418-463      4.61  305.16  0.00480       10.0%     28.74
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   87-124    LTERQLDLGTLN-KVFASQWL-NARQVV-------CGTKC-NTLFVVD
   WD 2  143-178    -----LAQAHQGCGIHAIELNPSKTLLA-------TGGENPNSLAIYQ
   WD 3  184-221    PLCLGDRHGHKD-WIFAVAWLSDT-VAV-------SGSRD-GTVALWR
   WD 4  255-290    ---RASTNPSNR-KVRALAFSGKNQELG-------AVSLD-GYFHLWK
   WD 5  296-334    SRLLSIRLPYCR-ENVCLTYCDELSLYA-------VGSQS-HVSFLDP
   WD 6  338-376    QQNIRPLCSREG-GTGVRSLSFYQHIIT-------VGTGH-GSLLFYD
   WD 7  380-418    QKFLEERASSSL-DSMPGPAGRKLKLAC-------GRGWL-NQDDVWV
   WD 8  418-463    VNYFGGMGEFPN-ALYTHCYNWPEMKLFVAGGPLPSGLHG-NYAGLWS

   WD40 Template    GECLRTLSGHTS-GVTSVSFSPDGKRLV-------SGSED-GTIKVWD


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Last modified: 09 Jan 2019