Input parameters:
Query = ENSP00000353128 (Len=463)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000353128, Len=463):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAQQQTGSRKRKAPAVEAGAGSSSSQGLAAADGEGPLLPKKQKRPATRRRLVHYLKGREVGARGPAGLQGFEGELRGYAV 80
WD40-rpts
Query 81 QRLPELLTERQLDLGTLNKVFASQWLNARQVVCGTKCNTLFVVDVQSGHITRIPLMRDKEAGLAQAHQGCGIHAIELNPS 160
WD40-rpts (________________WD 1________________) (_______________WD
Query 161 KTLLATGGENPNSLAIYQLPTLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDMFNGSIAWHSEVGLP 240
WD40-rpts 2_______________) (________________WD 3________________)
Query 241 VYAHIRPRDVEAIPRASTNPSNRKVRALAFSGKNQELGAVSLDGYFHLWKARSTLSRLLSIRLPYCRENVCLTYCDELSL 320
WD40-rpts (_______________WD 4_______________) (_________________WD 5___
Query 321 YAVGSQSHVSFLDPRQRQQNIRPLCSREGGTGVRSLSFYQHIITVGTGHGSLLFYDIRAQKFLEERASSSLDSMPGPAGR 400
WD40-rpts _____________) (_________________WD 6________________) (_________________WD
Query 401 KLKLACGRGWLNQDDVWVNYFGGMGEFPNALYTHCYNWPEMKLFVAGGPLPSGLHGNYAGLWS 463
WD40-rpts 7________________)____________________WD 8____________________)
8 WD40-repeats found in QUERY=ENSP00000353128 (Len=463):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 87-124 4.48 299.75 0.00567 17.5% 44.88
WD 2: Seg 6 143-178 5.11 325.61 0.00254 15.0% 47.09
WD 3: Seg 9 184-221 7.83 438.10 7.7e-05 35.0% 48.71
WD 4: Seg 16 255-290 7.43 421.56 0.00013 20.0% 51.51
WD 5: Seg 20 296-334 7.14 409.47 0.00019 7.5% 53.13
WD 6: Seg 24 338-376 6.31 375.23 0.00055 20.0% 49.99
WD 7: Seg 28 380-418 3.58 262.41 0.01797 10.0% 19.56
WD 8: Seg 31 418-463 4.61 305.16 0.00480 10.0% 28.74
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 87-124 LTERQLDLGTLN-KVFASQWL-NARQVV-------CGTKC-NTLFVVD
WD 2 143-178 -----LAQAHQGCGIHAIELNPSKTLLA-------TGGENPNSLAIYQ
WD 3 184-221 PLCLGDRHGHKD-WIFAVAWLSDT-VAV-------SGSRD-GTVALWR
WD 4 255-290 ---RASTNPSNR-KVRALAFSGKNQELG-------AVSLD-GYFHLWK
WD 5 296-334 SRLLSIRLPYCR-ENVCLTYCDELSLYA-------VGSQS-HVSFLDP
WD 6 338-376 QQNIRPLCSREG-GTGVRSLSFYQHIIT-------VGTGH-GSLLFYD
WD 7 380-418 QKFLEERASSSL-DSMPGPAGRKLKLAC-------GRGWL-NQDDVWV
WD 8 418-463 VNYFGGMGEFPN-ALYTHCYNWPEMKLFVAGGPLPSGLHG-NYAGLWS
WD40 Template GECLRTLSGHTS-GVTSVSFSPDGKRLV-------SGSED-GTIKVWD