Input parameters:
Query = ENSP00000351446 (Len=334)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000351446, Len=334):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80
WD40-rpts (_______________WD 1______________)_________________WD 2________________) (___
Query 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
WD40-rpts ______________WD 3________________) (_________________WD 4________________)
Query 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
WD40-rpts (_________________WD 5________________) (_________________WD 6________________
Query 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
WD40-rpts _) (__________________WD 7__________________) (__________________WD 8_______
Query 321 LENDKTIKLWKSDC 334
WD40-rpts __________)
8 WD40-repeats found in QUERY=ENSP00000351446 (Len=334):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-35 5.14 327.01 0.00244 7.5% 4.13
WD 2: Seg 2 35-73 9.32 499.81 1.1e-05 47.5% 51.95
WD 3: Seg 6 77-115 10.90 565.08 1.5e-06 45.0% 57.48
WD 4: Seg 10 119-157 10.93 566.33 1.4e-06 42.5% 56.82
WD 5: Seg 14 161-199 10.93 565.96 1.5e-06 45.0% 56.07
WD 6: Seg 18 203-242 9.49 506.70 9.2e-06 42.5% 53.30
WD 7: Seg 22 246-287 8.85 480.33 2.1e-05 37.5% 57.07
WD 8: Seg 26 291-331 8.44 463.37 3.5e-05 35.0% 51.31
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-35 ----MAT-EEKKPETEAARAQ---PTPSSSATQS--KPTPVKPNY
WD 2 35-73 YALKFTL-AGHTKAVSSVKFS---PNGEWLASSS--ADKLIKIWG
WD 3 77-115 GKFEKTI-SGHKLGISDVAWS---SDSNLLVSAS--DDKTLKIWD
WD 4 119-157 GKCLKTL-KGHSNYVFCCNFN---PQSNLIVSGS--FDESVRIWD
WD 5 161-199 GKCLKTL-PAHSDPVSAVHFN---RDGSLIVSSS--YDGLCRIWD
WD 6 203-242 GQCLKTLIDDDNPPVSFVKFS---PNGKYILAAT--LDNTLKLWD
WD 7 246-287 GKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGS--EDNLVYIWN
WD 8 291-331 KEIVQKL-QGHTDVVISTACH---PTENIIASAALENDKTIKLWK
WD40 Template GECLRTL-SGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD