WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000350866    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000350866 (Len=384)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000350866, Len=384):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCCCFSPSGHILASCSTDGTTVL 80  
WD40-rpts      (________________WD 1________________)     (_________________WD 2_______________

Query       81 WNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSC 160 
WD40-rpts      _)   (_________________WD 3_________________)   (_________________WD 4__________

Query      161 GDLTVWDDKMRCPHSEKAHDLGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILARRTEHQLKQFTEDW 240 
WD40-rpts      ______)  (______________________WD 5_____________________)   (__________________

Query      241 SEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPI 320 
WD40-rpts      WD 6_________________)  (_______________WD 7______________)                     

Query      321 TRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK 384 
WD40-rpts                                                                      



7 WD40-repeats found in QUERY=ENSP00000350866 (Len=384):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.31  457.98  4.2e-05       27.5%     42.16
  WD 2:  Seg  4    44-82       9.23  495.79  1.3e-05       37.5%     42.94
  WD 3:  Seg  7    86-125      9.00  486.58  1.7e-05       37.5%     55.90
  WD 4:  Seg 11   129-167      9.81  519.95  6.1e-06       32.5%     55.43
  WD 5:  Seg 15   170-218      7.72  433.39  9.0e-05       30.0%     54.26
  WD 6:  Seg 19   222-262      6.70  391.29  0.00033       10.0%     55.27
  WD 7:  Seg 23   265-299      5.54  343.60  0.00146       12.5%     25.91
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-38     MVKLIHTLADHG-DDVNCCAFS--FS----------LLATCSLD--KTIRLYS
   WD 2   44-82     -ELPHSPLKFHT-YAVHCCCFSPSGH----------ILASCSTD--GTTVLWN
   WD 3   86-125    -GQMLAVMEQPSGSPVRVCQFSPDST----------CLASGAAD--GTVVLWN
   WD 4  129-167    -YKLYRCGSVKD-GSLAACAFSPNGS----------FFVTGSSC--GDLTVWD
   WD 5  170-218    -MRCPHSEKAHD-LGITCCDFSSQPVSDGEQGLQFFRLASCGQD--CQVKIWI
   WD 6  222-262    -THILARRTEHQ-LKQFTEDWSEEDV----------STWLCAQDLKDLVGIFK
   WD 7  265-299    NIDGK-----EL-LNLTKESLADDLK----------IESLGLRS--KVLRKIE

   WD40 Template    TGECLRTLSGHT-SGVTSVSFSPDGK----------RLVSGSED--GTIKVWD


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Last modified: 09 Jan 2019