Input parameters:
Query = ENSP00000350866 (Len=384)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000350866, Len=384):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCCCFSPSGHILASCSTDGTTVL 80
WD40-rpts (________________WD 1________________) (_________________WD 2_______________
Query 81 WNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSC 160
WD40-rpts _) (_________________WD 3_________________) (_________________WD 4__________
Query 161 GDLTVWDDKMRCPHSEKAHDLGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILARRTEHQLKQFTEDW 240
WD40-rpts ______) (______________________WD 5_____________________) (__________________
Query 241 SEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPI 320
WD40-rpts WD 6_________________) (_______________WD 7______________)
Query 321 TRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK 384
WD40-rpts
7 WD40-repeats found in QUERY=ENSP00000350866 (Len=384):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-38 8.31 457.98 4.2e-05 27.5% 42.16
WD 2: Seg 4 44-82 9.23 495.79 1.3e-05 37.5% 42.94
WD 3: Seg 7 86-125 9.00 486.58 1.7e-05 37.5% 55.90
WD 4: Seg 11 129-167 9.81 519.95 6.1e-06 32.5% 55.43
WD 5: Seg 15 170-218 7.72 433.39 9.0e-05 30.0% 54.26
WD 6: Seg 19 222-262 6.70 391.29 0.00033 10.0% 55.27
WD 7: Seg 23 265-299 5.54 343.60 0.00146 12.5% 25.91
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-38 MVKLIHTLADHG-DDVNCCAFS--FS----------LLATCSLD--KTIRLYS
WD 2 44-82 -ELPHSPLKFHT-YAVHCCCFSPSGH----------ILASCSTD--GTTVLWN
WD 3 86-125 -GQMLAVMEQPSGSPVRVCQFSPDST----------CLASGAAD--GTVVLWN
WD 4 129-167 -YKLYRCGSVKD-GSLAACAFSPNGS----------FFVTGSSC--GDLTVWD
WD 5 170-218 -MRCPHSEKAHD-LGITCCDFSSQPVSDGEQGLQFFRLASCGQD--CQVKIWI
WD 6 222-262 -THILARRTEHQ-LKQFTEDWSEEDV----------STWLCAQDLKDLVGIFK
WD 7 265-299 NIDGK-----EL-LNLTKESLADDLK----------IESLGLRS--KVLRKIE
WD40 Template TGECLRTLSGHT-SGVTSVSFSPDGK----------RLVSGSED--GTIKVWD