WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000350301    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000350301 (Len=891)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000350301, Len=891):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRFRYIILKQKFLEALCVNNAMSAEDEPQ 80  
WD40-rpts                                                                                      

Query       81 HLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTARVHCFEEACVMVAEFIPADRKLSEAGFK 160 
WD40-rpts                                                                                      

Query      161 ASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSVFSCAFEQKMLNIH 240 
WD40-rpts                                                                                      

Query      241 VDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDLGNKTSPMSHSFANF 320 
WD40-rpts                                                                                      

Query      321 HYPGVQNLSRSLMLENTECHSIYEESPERDTPVDAQRPIGSEILGQSSVSEKEPANGAQNPGPAKQEKNELRDSTEQFQE 400 
WD40-rpts                                                                                      

Query      401 YYRQRLRYQQHLEQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDGLGNEVSALNQQCNGSK 480 
WD40-rpts                                                                 (______________WD 1__

Query      481 GNGSNGSSVTSFTTPPQDSSQRLTHDASNIHTSTPRNPGSTNHIPFLEESPCGSQISSEHSVIKPPLGDSPGSLSRSKGE 560 
WD40-rpts      ____________)           (____________________WD 2___________________)           

Query      561 EDDKSKKQFVCINILEDTQAVRAVAFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVVRFKRNKHHKGSIYCVA 640 
WD40-rpts                   (______________WD 3_____________)                (_________________

Query      641 WSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQRGQGL 720 
WD40-rpts      WD 4________________)(_______________________WD 5_______________________)   (___

Query      721 HALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYD 800 
WD40-rpts      _____________WD 6________________)         (________________WD 7_______________)

Query      801 IRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQDLSFLSSSA 880 
WD40-rpts         (_________________WD 8________________)       (_________________WD 9_________

Query      881 DRTVTLWTYNG 891 
WD40-rpts      _______)   



9 WD40-repeats found in QUERY=ENSP00000350301 (Len=891):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   460-493      4.59  304.25  0.00493       15.0%     30.46
  WD 2:  Seg  8   505-549      5.87  357.13  0.00096       17.5%     18.06
  WD 3:  Seg 11   574-606      6.82  396.46  0.00028       25.0%     46.68
  WD 4:  Seg 14   623-661      7.90  440.81  7.1e-05       27.5%     52.12
  WD 5:  Seg 18   662-713      5.27  332.16  0.00208       20.0%     43.72
  WD 6:  Seg 21   717-754      8.73  475.14  2.5e-05       37.5%     52.65
  WD 7:  Seg 26   764-800      8.95  484.39  1.8e-05       35.0%     46.14
  WD 8:  Seg 29   804-842      9.68  514.66  7.2e-06       42.5%     57.01
  WD 9:  Seg 33   850-888      7.49  423.92  0.00012       17.5%     50.74
Multiple sequence alignment of 9 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  460-493    IG-----------------MDGLGNEVSALNQ-----QCNGS-KGNGSNGSSVTSFT
   WD 2  505-549    HDASNIHTST-------PRNPGSTNHIPFLEE-----SPCGSQISSEHSVIKPPLGD
   WD 3  574-606    -------------------ILEDTQAVRAVAF-----HPAGGLYAVGSNSKTLRVCA
   WD 4  623-661    -V-----VRF-------KRNKHHKGSIYCVAW-----SPCGQLLATGSNDKYVKVLP
   WD 5  662-713    FN-----AETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTD
   WD 6  717-754    -G-----QGL-------HALSGHTGHILAL-Y-----TWSGWMIASGSQDKTVRFWD
   WD 7  764-800    VG---------------TTFHGTGSAVASVAV-----DPSGRLLATGQEDSSCMLYD
   WD 8  804-842    -G-----RMV-------QSYHPHSSDVRSVRF-----SPGAHYLLTGSYDMKIKVTD
   WD 9  850-888    -Q-----LPI-------MVVGEHKDKVIQCRW-----HTQDLSFLSSSADRTVTLWT

   WD40 Template    TG-----ECL-------RTLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019