Input parameters:
Query = ENSP00000347194 (Len=125)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000347194, Len=125):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWD 80
WD40-rpts (________________WD 1________________) (_________________WD 2________________)
Query 81 CETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFF 125
WD40-rpts (________________WD 3_______________)
3 WD40-repeats found in QUERY=ENSP00000347194 (Len=125):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-38 8.93 483.41 1.9e-05 22.5% 49.54
WD 2: Seg 5 42-80 10.24 537.54 3.5e-06 40.0% 53.29
WD 3: Seg 9 84-120 5.71 350.35 0.00118 20.0% 49.01
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-38 MKPI--LLQGHERSITQIKYNREGDLLFTVAKDPIVNVWY
WD 2 42-80 -GERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWD
WD 3 84-120 -GKQLALLKTN-SAVRTCGFDFGGNIIMFST-DKQMGYQC
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD