WDRR: WD40 Repeat Recognition
[HOME]   [JOB LIST]   [PRE-CALCULATED RESULTS]   [VISITORS]   [ABOUT]

Pre-calculated Results - Accession: ENSP00000347194    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000347194 (Len=125)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000347194, Len=125):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWD 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 CETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFF 125 
WD40-rpts         (________________WD 3_______________)     



3 WD40-repeats found in QUERY=ENSP00000347194 (Len=125):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.93  483.41  1.9e-05       22.5%     49.54
  WD 2:  Seg  5    42-80      10.24  537.54  3.5e-06       40.0%     53.29
  WD 3:  Seg  9    84-120      5.71  350.35  0.00118       20.0%     49.01
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-38     MKPI--LLQGHERSITQIKYNREGDLLFTVAKDPIVNVWY
   WD 2   42-80     -GERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWD
   WD 3   84-120    -GKQLALLKTN-SAVRTCGFDFGGNIIMFST-DKQMGYQC

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University
Powered and maintained by Chuan Wang
Last modified: 09 Jan 2019