WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000347102    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000347102 (Len=770)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000347102, Len=770):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFPQSRHPTPHQAAGQPFKFTIPESLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTICAQVIPFLSQEHQQQVAQAVERAKQVTMAELNAIIGQQQLQAQHLSHGHGPPVPLTPHPSGLQPPGIPPLGG 160 
WD40-rpts                                                                                      

Query      161 SAGLLALSSALSGQSHLAIKDDKKHHDAEHHRGERPGKSNSLLVPDSLRGTDKRRNGPEFSNDIKKRKVDDKDSSHYDSD 240 
WD40-rpts                                                                                      

Query      241 GDKSDDNLVVDVSNEDPSSPRASPAHSPRENGIDKNRLLKKDASSSPASTASSASSTSLKSKEMSLHEKASTPVLKSSTP 320 
WD40-rpts                                                                                      

Query      321 TPRSDMPTPGTSATPGLRPGLGKPPAIDPLVNQAAAGLRTPLAVPGPYPAPFGMVPHAGMNGELTSPGAAYASLHNMSPQ 400 
WD40-rpts                                                                                      

Query      401 MSAAAAAAAVVAYGRSPMVGFDPPPHMRVPTIPPNLAGIPGGKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT 480 
WD40-rpts                                                                       (______________

Query      481 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 560 
WD40-rpts      ______WD 1____________________)(_____________________WD 2____________________)  

Query      561 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 640 
WD40-rpts         (_________________WD 3________________)   (_________________WD 4_____________

Query      641 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 720 
WD40-rpts      ___)(__________________WD 5_________________)(__________________WD 6____________

Query      721 LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 770 
WD40-rpts      _____)  (_________________WD 7________________)   



7 WD40-repeats found in QUERY=ENSP00000347102 (Len=770):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   466-511      6.03  363.61  0.00078       25.0%     50.13
  WD 2:  Seg 11   512-558      7.62  429.62  0.00010       25.0%     48.89
  WD 3:  Seg 14   564-602      8.69  473.44  2.6e-05       30.0%     55.40
  WD 4:  Seg 18   606-644      9.94  525.12  5.2e-06       35.0%     54.73
  WD 5:  Seg 22   645-685      7.13  409.21  0.00019       25.0%     52.11
  WD 6:  Seg 26   686-726      8.34  458.99  4.1e-05       30.0%     54.04
  WD 7:  Seg 30   729-767      7.68  431.80  9.4e-05       30.0%     52.60
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  466-511    LIG-------PGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWD
   WD 2  512-558    ISHPGNKSPVS-------QLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWD
   WD 3  564-602    -PR-------I-------KAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWD
   WD 4  606-644    -QT-------L-------VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWD
   WD 5  645-685    LRE-------G-------RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 6  686-726    VNK------PD-------KYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 7  729-767    -YG-------A-------SIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------C-------LRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019