WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000345027    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000345027 (Len=366)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000345027, Len=366):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLLRCQLKQAPPQKVSFRFCVVMGKQQSKLKHSTYKYGPDEIIEERIQTKAFQEYSPAHMDTVSVVAALNSDLCVSGGK 80  
WD40-rpts                                                        (________________WD 1_________

Query       81 DKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQL 160 
WD40-rpts      _______)   (_________________WD 2________________)    (_________________WD 3____

Query      161 CTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVD 240 
WD40-rpts      ____________)   (_________________WD 4________________)   (___________________WD

Query      241 GHKCISCSNGFGGEGCEATLWDLRQTRNRICEYKGHFQTVASCVFLPRALALMPLIATSSHDCKVKIWNQDTGACLFTLS 320 
WD40-rpts       5___________________)    (___________________WD 6__________________)   (_______

Query      321 LDGSGPLTSLAVGDAISLLCASFNRGIHLLRMDHSQGLELQEVAAF 366 
WD40-rpts      __________WD 7________________)               



7 WD40-repeats found in QUERY=ENSP00000345027 (Len=366):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    51-88       7.34  417.69  0.00015       22.5%     47.16
  WD 2:  Seg  9    92-130      9.80  519.48  6.2e-06       27.5%     56.48
  WD 3:  Seg 13   135-173     10.17  534.74  3.9e-06       37.5%     54.90
  WD 4:  Seg 17   177-215      9.60  511.32  8.0e-06       27.5%     54.77
  WD 5:  Seg 21   219-262      7.65  430.52  9.8e-05       22.5%     44.52
  WD 6:  Seg 25   267-309      7.83  438.14  7.7e-05       27.5%     47.01
  WD 7:  Seg 29   313-351      8.81  478.76  2.2e-05       30.0%     54.75
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   51-88     KAFQEYSPAHMDTV-SVVAALNSDLC----VS-----GGKDKTVVAYN
   WD 2   92-130    GNVVKRFKGHEHEITKVACIPKSSQF----FS-----ASRDRMVMMWD
   WD 3  135-173    SQPRQQLCGHAMVVTGLAVSPDSSQL----CT-----GSRDNTLLLWD
   WD 4  177-215    GQSVERASVSRNVVTHLCWVPREPYI----LQ-----TSEDKTLRLWD
   WD 5  219-262    LQVAHMFPAKQHIQTYCEVSVDGHKC----ISCSNGFGGEGCEATLWD
   WD 6  267-309    RNRICEYKGHFQTVASCVFLPRALALMPLIAT-----SSHDCKVKIWN
   WD 7  313-351    GACLFTLSLDGSGPLTSLAVGDAISL----LC-----ASFNRGIHLLR

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRL----VS-----GSEDGTIKVWD


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Last modified: 09 Jan 2019