Input parameters:
Query = ENSP00000345027 (Len=366)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000345027, Len=366):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLLLRCQLKQAPPQKVSFRFCVVMGKQQSKLKHSTYKYGPDEIIEERIQTKAFQEYSPAHMDTVSVVAALNSDLCVSGGK 80
WD40-rpts (________________WD 1_________
Query 81 DKTVVAYNWKTGNVVKRFKGHEHEITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQL 160
WD40-rpts _______) (_________________WD 2________________) (_________________WD 3____
Query 161 CTGSRDNTLLLWDVVTGQSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVD 240
WD40-rpts ____________) (_________________WD 4________________) (___________________WD
Query 241 GHKCISCSNGFGGEGCEATLWDLRQTRNRICEYKGHFQTVASCVFLPRALALMPLIATSSHDCKVKIWNQDTGACLFTLS 320
WD40-rpts 5___________________) (___________________WD 6__________________) (_______
Query 321 LDGSGPLTSLAVGDAISLLCASFNRGIHLLRMDHSQGLELQEVAAF 366
WD40-rpts __________WD 7________________)
7 WD40-repeats found in QUERY=ENSP00000345027 (Len=366):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 51-88 7.34 417.69 0.00015 22.5% 47.16
WD 2: Seg 9 92-130 9.80 519.48 6.2e-06 27.5% 56.48
WD 3: Seg 13 135-173 10.17 534.74 3.9e-06 37.5% 54.90
WD 4: Seg 17 177-215 9.60 511.32 8.0e-06 27.5% 54.77
WD 5: Seg 21 219-262 7.65 430.52 9.8e-05 22.5% 44.52
WD 6: Seg 25 267-309 7.83 438.14 7.7e-05 27.5% 47.01
WD 7: Seg 29 313-351 8.81 478.76 2.2e-05 30.0% 54.75
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 51-88 KAFQEYSPAHMDTV-SVVAALNSDLC----VS-----GGKDKTVVAYN
WD 2 92-130 GNVVKRFKGHEHEITKVACIPKSSQF----FS-----ASRDRMVMMWD
WD 3 135-173 SQPRQQLCGHAMVVTGLAVSPDSSQL----CT-----GSRDNTLLLWD
WD 4 177-215 GQSVERASVSRNVVTHLCWVPREPYI----LQ-----TSEDKTLRLWD
WD 5 219-262 LQVAHMFPAKQHIQTYCEVSVDGHKC----ISCSNGFGGEGCEATLWD
WD 6 267-309 RNRICEYKGHFQTVASCVFLPRALALMPLIAT-----SSHDCKVKIWN
WD 7 313-351 GACLFTLSLDGSGPLTSLAVGDAISL----LC-----ASFNRGIHLLR
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRL----VS-----GSEDGTIKVWD