WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000341037    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000341037 (Len=569)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000341037, Len=569):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEGGGKEMNEIKTQFTTREGLYKLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQSGNGDRLCFNVGRELYFYIYKG 80  
WD40-rpts                                                            (_____________WD 1________

Query       81 VRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPG 160 
WD40-rpts      _____)   (__________________WD 2__________________)         (________________WD 

Query      161 SESLFLVAHSSGNMYLYNVEHTCGTTAPHYQLLKQGESFAVHTCKSKSTRNPLLKWTVGEGALNEFAFSPDGKFLACVSQ 240 
WD40-rpts      3________________)(___________WD 4___________)   (_________________WD 5_________

Query      241 DGFLRVFNFDSVELHGTMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVE 320 
WD40-rpts      _______)   (_________________WD 6________________)   (____________________WD 7__

Query      321 EGDPMEFSGSDEDFQDLLHFGRDRANSTQSRLSKRNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARTH 400 
WD40-rpts      __________________)(___________________WD 8__________________)        (_________

Query      401 TNVMNATSPPAGSNGNSVTTPGNSVPPPLPRSNSLPHSAVSNAGSKSSVMDGAIASGVSKFATLSLHDRKERHHEKDHKR 480 
WD40-rpts      _________WD 9_________________)    (_________________WD10________________)______

Query      481 NHSMGHISSKSSDKLNLVTKTKTDPAKTLGTPLCPRMEDVPLLEPLICKKIAHERLTVLIFLEDCIVTACQEGFICTWGR 560 
WD40-rpts      _________WD11________________)            (________________WD12_______________) 

Query      561 PGKVVSFNP 569 
WD40-rpts               



12 WD40-repeats found in QUERY=ENSP00000341037 (Len=569):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    55-86       3.40  254.99  0.02257       17.5%     38.44
  WD 2:  Seg  6    90-131      6.09  366.26  0.00072       15.0%     54.74
  WD 3:  Seg 11   141-178      5.10  325.39  0.00256       17.5%     41.43
  WD 4:  Seg 14   179-206      3.71  267.75  0.01524       10.0%     35.98
  WD 5:  Seg 17   210-248      9.05  488.56  1.6e-05       30.0%     54.62
  WD 6:  Seg 21   252-290      9.87  522.25  5.7e-06       37.5%     55.89
  WD 7:  Seg 25   294-339      6.22  371.72  0.00061       22.5%     44.28
  WD 8:  Seg 29   340-382      6.75  393.32  0.00031       22.5%     51.81
  WD 9:  Seg 33   391-431      5.75  352.01  0.00112       12.5%     32.87
  WD10:  Seg 36   436-474      5.37  336.39  0.00182       10.0%     45.45
  WD11:  Seg 39   472-510      6.36  377.39  0.00051       17.5%     19.26
  WD12:  Seg 41   523-559      4.98  320.50  0.00298       22.5%     44.26
Multiple sequence alignment of 12 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   55-86     --------LNDQSG---NGDRLCFNV---GR--EL-YFY-------IYKGVRKAAD
   WD 2   90-131    -P-IDKRIYKGTQPTCHDFNHLTATA--ESV--SL-LVG-------FSAGQVQLID
   WD 3  141-178    ----FNEERLIDKS---RVTCVKWVP--GSE--SLFLVA-------HSSGNMYLYN
   WD 4  179-206    -------------V---EHTCGTTAP--HYQ--LL-KQG-------ESFAVHTCKS
   WD 5  210-248    -R-NPLLKWTVGEG---ALNEFAFSP--DGK--FL-ACV-------SQDGFLRVFN
   WD 6  252-290    -V-ELHGTMKSYFG---GLLCVCWSP--DGK--YI-VTG-------GEDDLVTVWS
   WD 7  294-339    -C-RVIARGHGHKS---WVSVVAFDP--YTT--SV-EEGDPMEFSGSDEDFQDLLH
   WD 8  340-382    FGRDRANSTQSRLS---KRNSTDSRP--VSVTYRF-GSV-------GQDTQLCLWD
   WD 9  391-431    -H-QPLSRARTHTN---VMNATSPPAGSNGN--SV-TTP-------GNSVPPPLPR
   WD10  436-474    -P-HSAVSNAGSKS---SVMDGAIAS--GVS--KF-ATL-------SLHDRKERHH
   WD11  472-510    -R-HHEKDHKRNHS---MGHISSKSS--DKL--NL-VTK-------TKTDPAKTLG
   WD12  523-559    -L-EPLICKKIAHE---RLTVLIFLE--DC----I-VTA-------CQEGFICTWG

   WD40 Template    TG-ECLRTLSGHTS---GVTSVSFSP--DGK--RL-VSG-------SEDGTIKVWD


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Last modified: 09 Jan 2019