Input parameters:
Query = ENSP00000335664 (Len=372)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000335664, Len=372):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEWKLERTAPRRVRTEEEMLWESIMRVLSKDLKQKRSQDSANVLDSVNATYSDFKSNFAKRLSAEVPVASSPITTRWQQS 80
WD40-rpts
Query 81 QTRALSSDSFGEEQSTTYLPEASGSVLKTPPEKETLTLGSRKEQLKTPSKGISETSNSALHFCKAPHAMDRDWKESVASK 160
WD40-rpts
Query 161 GQKCLKQLFVTQNVVQQANGKMQLCEQSECVWKGCKDGVRDESFHLKSSGDINDSILQPEVKIHITGLRNDYYLNILDWS 240
WD40-rpts
Query 241 FQNLVAIALGSAVYIWNGENHNGIENIDLSLTCNYISSVSWIKEGTCLAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGA 320
WD40-rpts (_________________WD 1________________) (_______________
Query 321 LSWNHFILSRLEFSGVISAHCNLHLPSSWDYRRPPPCLVGQDWGVFIITMFG 372
WD40-rpts _WD 2_______________)
2 WD40-repeats found in QUERY=ENSP00000335664 (Len=372):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 263-301 6.89 399.09 0.00026 30.0% 51.20
WD 2: Seg 8 305-341 4.32 293.08 0.00697 25.0% 45.54
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 263-301 GIENIDLSLTCNYISSVSWIKEGTCLAVGTSEGEVQLWD
WD 2 305-341 KKRLRNMLGHLSVVGALSWNHF--ILSRLEFSGVISAHC
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD