WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000329951    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000329951 (Len=126)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000329951, Len=126):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLEKLMGADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEGWKRRHEDGYLEMAQRHLQRS 80  
WD40-rpts            (______________________________________WD 1_______________________________

Query       81 LCPWVSYLPQPYAEHSKVILNGNLHCHFKRISQIFAGHFMEGDTEV 126 
WD40-rpts      ______)                                       



1 WD40-repeats found in QUERY=ENSP00000329951 (Len=126):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-87       2.87  233.20  0.04390       20.0%     12.47
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    7-87     GADSLQLFRSRYTLGKIYFIGFQRSILLSKSENSLNSIAKETEEGRETVTRKEGWKRRHEDGYLEMAQRHLQRSLCPWVSY

   WD40 Template    GEC---------LRTLSGHTSGVTSVSFSPDGK-------------RLVS-------GSEDG-------------TIKVWD


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Last modified: 09 Jan 2019