Input parameters:
Query = ENSP00000327796 (Len=396)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000327796, Len=396):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEAERLRLLEEEAKLKKVARMGFNASSMLRKSQLGFLNVTSYSRLANELRVSCMERKKVQIRSLDPSSLASDRFNFILAS 80
WD40-rpts (_________________WD 1______
Query 81 TNSDQLFVVNQVEVEGSKYGIISLRTLKIPSFHVYVLRNLYVPNRKVKSLCWASLNQLDSHVLLCFEGITDAPSCAVLLP 160
WD40-rpts __________) (_________________WD 2_________________) (_________________WD
Query 161 ASRFLSVHTRVNQPGMLCSFQIPEAWSCAWSLNTRAYHCFSAGLSQQVLLTSVATGHQQSFDTSSDVLAQQFASTAPLLF 240
WD40-rpts 3________________)______________WD 4_______________)(_________________WD 5______
Query 241 NGCRSGEIFAIDLRCRNRGKGWRATRLFHDSAVTSVQILQEEQCLMASDMTGKIKLWDLRATKCVRQYEGHVNESAYLPL 320
WD40-rpts ___________) (_________________WD 6________________) (__________________
Query 321 HVHEEEGIVVAVGQDCYTRIWSLHDAHLLRTIPSPYSASEDDIPSVAFASRLGGIRGAAPGLLMAVRQDLYCFPFS 396
WD40-rpts WD 7_________________) (___________________WD 8__________________)
8 WD40-repeats found in QUERY=ENSP00000327796 (Len=396):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 53-91 3.92 276.40 0.01167 15.0% 10.71
WD 2: Seg 4 95-134 3.38 254.19 0.02313 12.5% 25.30
WD 3: Seg 8 140-178 3.45 257.20 0.02109 12.5% 28.86
WD 4: Seg 11 176-212 5.32 334.41 0.00194 10.0% 46.90
WD 5: Seg 15 213-252 7.86 439.53 7.4e-05 20.0% 52.51
WD 6: Seg 19 260-298 8.62 470.94 2.8e-05 32.5% 45.48
WD 7: Seg 22 302-342 7.82 437.88 7.8e-05 20.0% 55.99
WD 8: Seg 26 346-388 3.24 248.42 0.02761 20.0% 18.52
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 53-91 CME-RKKV----QIRS--LDPSSLASDRFNFILASTNSDQLFVVNQ
WD 2 95-134 EGSKYGII----SLRT--LKIPSFHVYVLRNLYVPNRKVKSLCWAS
WD 3 140-178 -SHVLLCF----EGIT--DAPSCAVLLPASRFLSVHTRVNQPGMLC
WD 4 176-212 -MLCSFQI----PEAW--SCAWSL--NTRAYHCFSAGLSQQVLLTS
WD 5 213-252 VATGHQQS----FDTS--SDVLAQQFASTAPLLFNGCRSGEIFAID
WD 6 260-298 -KGWRATR----LFHD--SAVTSVQILQEEQCLMASDMTGKIKLWD
WD 7 302-342 -TKCVRQY----EGHVNESAYLPLHVHEEEGIVVAVGQDCYTRIWS
WD 8 346-388 -AHLLRTIPSPYSASE--DDIPSVAFASRLGGIRGAAPGLLMAVRQ
WD40 Template TGECLRTL----SGHT--SGVTSVSFSPDGKRLVSGSEDGTIKVWD