WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000327796    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000327796 (Len=396)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000327796, Len=396):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAERLRLLEEEAKLKKVARMGFNASSMLRKSQLGFLNVTSYSRLANELRVSCMERKKVQIRSLDPSSLASDRFNFILAS 80  
WD40-rpts                                                          (_________________WD 1______

Query       81 TNSDQLFVVNQVEVEGSKYGIISLRTLKIPSFHVYVLRNLYVPNRKVKSLCWASLNQLDSHVLLCFEGITDAPSCAVLLP 160 
WD40-rpts      __________)   (_________________WD 2_________________)     (_________________WD 

Query      161 ASRFLSVHTRVNQPGMLCSFQIPEAWSCAWSLNTRAYHCFSAGLSQQVLLTSVATGHQQSFDTSSDVLAQQFASTAPLLF 240 
WD40-rpts      3________________)______________WD 4_______________)(_________________WD 5______

Query      241 NGCRSGEIFAIDLRCRNRGKGWRATRLFHDSAVTSVQILQEEQCLMASDMTGKIKLWDLRATKCVRQYEGHVNESAYLPL 320 
WD40-rpts      ___________)       (_________________WD 6________________)   (__________________

Query      321 HVHEEEGIVVAVGQDCYTRIWSLHDAHLLRTIPSPYSASEDDIPSVAFASRLGGIRGAAPGLLMAVRQDLYCFPFS 396 
WD40-rpts      WD 7_________________)   (___________________WD 8__________________)        



8 WD40-repeats found in QUERY=ENSP00000327796 (Len=396):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    53-91       3.92  276.40  0.01167       15.0%     10.71
  WD 2:  Seg  4    95-134      3.38  254.19  0.02313       12.5%     25.30
  WD 3:  Seg  8   140-178      3.45  257.20  0.02109       12.5%     28.86
  WD 4:  Seg 11   176-212      5.32  334.41  0.00194       10.0%     46.90
  WD 5:  Seg 15   213-252      7.86  439.53  7.4e-05       20.0%     52.51
  WD 6:  Seg 19   260-298      8.62  470.94  2.8e-05       32.5%     45.48
  WD 7:  Seg 22   302-342      7.82  437.88  7.8e-05       20.0%     55.99
  WD 8:  Seg 26   346-388      3.24  248.42  0.02761       20.0%     18.52
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   53-91     CME-RKKV----QIRS--LDPSSLASDRFNFILASTNSDQLFVVNQ
   WD 2   95-134    EGSKYGII----SLRT--LKIPSFHVYVLRNLYVPNRKVKSLCWAS
   WD 3  140-178    -SHVLLCF----EGIT--DAPSCAVLLPASRFLSVHTRVNQPGMLC
   WD 4  176-212    -MLCSFQI----PEAW--SCAWSL--NTRAYHCFSAGLSQQVLLTS
   WD 5  213-252    VATGHQQS----FDTS--SDVLAQQFASTAPLLFNGCRSGEIFAID
   WD 6  260-298    -KGWRATR----LFHD--SAVTSVQILQEEQCLMASDMTGKIKLWD
   WD 7  302-342    -TKCVRQY----EGHVNESAYLPLHVHEEEGIVVAVGQDCYTRIWS
   WD 8  346-388    -AHLLRTIPSPYSASE--DDIPSVAFASRLGGIRGAAPGLLMAVRQ

   WD40 Template    TGECLRTL----SGHT--SGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019