WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000326531    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000326531 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000326531, Len=341):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERAVPLAVPLGQTEVFQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALSSEAKEESKKPVVTFQAHDGPVY 80  
WD40-rpts                   (_________________WD 1________________)             (______________

Query       81 SMVSTDRHLLSAGDGEVKAWLWAEMLKKGCKELWRRQPPYRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTF 160 
WD40-rpts      __WD 2________________)            (_________________WD 3________________)   (__

Query      161 TRVLRGHTDYIHCLALRERSPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDSDWMVCGGGPA 240 
WD40-rpts      _______________WD 4________________)   (____________________WD 5________________

Query      241 LTLWHLRSSTPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGLLSLSLNQQPAAPECKVLTAA 320 
WD40-rpts      ____)   (_______________WD 6_______________)  (___________________WD 7__________

Query      321 GNSCRVDVFTNLGYRAFSLSF 341 
WD40-rpts      _________)           



7 WD40-repeats found in QUERY=ENSP00000326531 (Len=341):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-52       9.28  498.20  1.2e-05       30.0%     51.54
  WD 2:  Seg  6    66-103      6.67  390.11  0.00034       22.5%     51.47
  WD 3:  Seg 11   116-154      8.02  446.10  6.0e-05       12.5%     44.38
  WD 4:  Seg 14   158-196     10.25  538.24  3.5e-06       32.5%     55.37
  WD 5:  Seg 18   200-245      5.67  348.75  0.00124       15.0%     46.84
  WD 6:  Seg 22   249-284      4.88  316.21  0.00341       12.5%     53.49
  WD 7:  Seg 26   287-330      7.90  440.92  7.1e-05       25.0%     56.87
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   14-52     TEVFQALQRLHMTIFSQ--------SV-----SPCGKFLAAGNNYGQIAIFS
   WD 2   66-103    KKPVVTFQAHDGPVYSM---------V-----STDRHLLSAGDGEVKAWLWA
   WD 3  116-154    RQPPYRTSLEVPEINAL--------LL-----VPKENSLILAGGDCQLHTMD
   WD 4  158-196    GTFTRVLRGHTDYIHCL--------AL-----RERSPEVLSGGEDGAVRLWD
   WD 5  200-245    AKEVQTIEVYKHEECSRPHNGRWIGCL-----ATDSDWMVCGG-GPALTLWH
   WD 6  249-284    STPTTIFPIRAP-QKHV--------TF-----YQD--LILSAGQGRCVNQWQ
   WD 7  287-330    GELKAQVPGSSPGLLSL--------SLNQQPAAPECKVLTAAGNSCRVDVFT

   WD40 Template    GECLRTLSGHTSGVTSV--------SF-----SPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019