Input parameters:
Query = ENSP00000318259 (Len=444)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000318259, Len=444):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSGLRAADFPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEKHDVPNRHEIRRRQARLQKEL 80
WD40-rpts
Query 81 AEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVFDAHDG 160
WD40-rpts (__________________WD 1__________________)(__________
Query 161 EVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT 240
WD40-rpts ______WD 2________________) (_________________WD 3________________) (_____
Query 241 LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVR 320
WD40-rpts ____________WD 4________________) (_______________WD 5_______________) (_____
Query 321 EMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSV 400
WD40-rpts ____________WD 6________________) (___________________WD 7__________________)
Query 401 LTGKVEKVLSKQHSSSINAVAWSPSGSHVVSVDKGCKAVLWAQY 444
WD40-rpts (_________________WD 8_________________)
8 WD40-repeats found in QUERY=ENSP00000318259 (Len=444):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 108-149 4.57 303.50 0.00505 15.0% 26.94
WD 2: Seg 6 150-187 9.36 501.46 1.1e-05 32.5% 50.83
WD 3: Seg 10 193-231 9.37 501.77 1.1e-05 32.5% 53.91
WD 4: Seg 14 235-273 10.50 548.22 2.5e-06 45.0% 56.37
WD 5: Seg 18 277-312 6.77 394.40 0.00030 22.5% 45.50
WD 6: Seg 22 315-353 7.87 439.87 7.3e-05 25.0% 52.27
WD 7: Seg 26 357-399 8.29 457.22 4.3e-05 35.0% 54.33
WD 8: Seg 30 403-442 8.31 457.74 4.2e-05 30.0% 49.20
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 108-149 EETSPVRAISRA-ATR----RSVSSFPVPQDNVDTHPGS-GKEVRVPA
WD 2 150-187 T-----ALCVFD-AHD----GEVNAVQFSPGSRLLATGGMDRRVKLWE
WD 3 193-231 -CE---FKGSLS-GSN----AGITSIEFDSAGSYLLAASNDFASRIWT
WD 4 235-273 -YR---LRHTLT-GHS----GKVLSAKFLLDNARIVSGSHDRTLKLWD
WD 5 277-312 -KV---CIKTVF-AGS----S---CNDIVCTEQCVMSGHFDKKIRFWD
WD 6 315-353 -SE---SIVREM-ELL----GKITALDLNPERTELLSCSRDDLLKVID
WD 7 357-399 -NA---IKQTFS-APGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWS
WD 8 403-442 -GK---VEKVLSKQHS----SSINAVAWSPSGSHVVSVDKGCKAVLWA
WD40 Template TGE---CLRTLS-GHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD