WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000318259    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000318259 (Len=444)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000318259, Len=444):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSGLRAADFPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEKHDVPNRHEIRRRQARLQKEL 80  
WD40-rpts                                                                                      

Query       81 AEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVFDAHDG 160 
WD40-rpts                                 (__________________WD 1__________________)(__________

Query      161 EVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT 240 
WD40-rpts      ______WD 2________________)     (_________________WD 3________________)   (_____

Query      241 LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVR 320 
WD40-rpts      ____________WD 4________________)   (_______________WD 5_______________)  (_____

Query      321 EMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSV 400 
WD40-rpts      ____________WD 6________________)   (___________________WD 7__________________) 

Query      401 LTGKVEKVLSKQHSSSINAVAWSPSGSHVVSVDKGCKAVLWAQY 444 
WD40-rpts        (_________________WD 8_________________)  



8 WD40-repeats found in QUERY=ENSP00000318259 (Len=444):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   108-149      4.57  303.50  0.00505       15.0%     26.94
  WD 2:  Seg  6   150-187      9.36  501.46  1.1e-05       32.5%     50.83
  WD 3:  Seg 10   193-231      9.37  501.77  1.1e-05       32.5%     53.91
  WD 4:  Seg 14   235-273     10.50  548.22  2.5e-06       45.0%     56.37
  WD 5:  Seg 18   277-312      6.77  394.40  0.00030       22.5%     45.50
  WD 6:  Seg 22   315-353      7.87  439.87  7.3e-05       25.0%     52.27
  WD 7:  Seg 26   357-399      8.29  457.22  4.3e-05       35.0%     54.33
  WD 8:  Seg 30   403-442      8.31  457.74  4.2e-05       30.0%     49.20
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  108-149    EETSPVRAISRA-ATR----RSVSSFPVPQDNVDTHPGS-GKEVRVPA
   WD 2  150-187    T-----ALCVFD-AHD----GEVNAVQFSPGSRLLATGGMDRRVKLWE
   WD 3  193-231    -CE---FKGSLS-GSN----AGITSIEFDSAGSYLLAASNDFASRIWT
   WD 4  235-273    -YR---LRHTLT-GHS----GKVLSAKFLLDNARIVSGSHDRTLKLWD
   WD 5  277-312    -KV---CIKTVF-AGS----S---CNDIVCTEQCVMSGHFDKKIRFWD
   WD 6  315-353    -SE---SIVREM-ELL----GKITALDLNPERTELLSCSRDDLLKVID
   WD 7  357-399    -NA---IKQTFS-APGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWS
   WD 8  403-442    -GK---VEKVLSKQHS----SSINAVAWSPSGSHVVSVDKGCKAVLWA

   WD40 Template    TGE---CLRTLS-GHT----SGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019