WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000314193    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000314193 (Len=830)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000314193, Len=830):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEEENIRVVRCGGSELNFRRAVFSADSKYIFCVSGDFVKVYSTVTEECVHILHGHRNLVTGIQLNPNNHLQLYSCSLDG 80  
WD40-rpts          (_________________WD 1________________)   (_________________WD 2____________

Query       81 TIKLWDYIDGILIKTFIVGCKLHALFTLAQAEDSVFVIVNKEKPDIFQLVSVKLPKSSSQEVEAKELSFVLDYINQSPKC 160 
WD40-rpts      _____)   (__________________WD 3_________________)             (________________

Query      161 IAFGNEGVYVAAVREFYLSVYFFKKKTTSRFTLSSSRNKKHAKNNFTCVACHPTEDCIASGHMDGKIRLWRNFYDDKKYT 240 
WD40-rpts      _WD 4________________)           (________________WD 5________________)      (__

Query      241 YTCLHWHHDMVMDLAFSVTGTSLLSGGRESVLVEWRDATEKNKEFLPRLGATIEHISVSPAGDLFCTSHSDNKIIIIHRN 320 
WD40-rpts      _______________WD 6________________)   (_________________WD 7________________)  

Query      321 LEASAVIQGLVKDRSIFTGLMIDPRTKALVLNGKPGHLQFYSLQSDKQLYNLDIIQQEYINDYGLIQIELTKAAFGCFGN 400 
WD40-rpts         (_________________WD 8________________)              (_____________________WD

Query      401 WLATVEQRQEKETELELQMKLWMYNKKTQGFILNTKINMPHEDCITALCFCNAEKSEQPTLVTASKDGYFKVWILTDDSD 480 
WD40-rpts       9____________________)          (__________________WD10_________________)(_____

Query      481 IYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSVTWELKCTFCQRAGKIRHLCFGRLTCSKYLLGAT 560 
WD40-rpts      __________________WD11______________________)   (__________________WD12_________

Query      561 ENGILCCWNLLSCALEWNAKLNVRVMEPDPNSENIAAISQSSVGSDLFVFKPSEPRPLYIQKGISREKVQWGVFVPRDVP 640 
WD40-rpts      ________)   (_________________WD13________________)(_________________WD14_______

Query      641 ESFTSEAYQWLNRSQFYFLTKSQSLLTFSTKSPEEKLTPTSKQLLAEESLPTTPFYFILGKHRQQQDEKLNETLENELVQ 720 
WD40-rpts      __________)                                                                     

Query      721 LPLTENIPAISELLHTPAHVLPSAAFLCSMFVNSLLLSKETKSAKEIPEDVDMEEEKESEDSDEENDFTEKVQDTSNTGL 800 
WD40-rpts                                                                                      

Query      801 GEDIIHQLSKSEEKELRKFRKIDYSWIAAL 830 
WD40-rpts                                    



14 WD40-repeats found in QUERY=ENSP00000314193 (Len=830):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-43       6.59  386.83  0.00038       22.5%     57.28
  WD 2:  Seg  5    47-86       8.96  484.66  1.8e-05       45.0%     58.91
  WD 3:  Seg  9    90-130      4.68  307.85  0.00441       12.5%     56.25
  WD 4:  Seg 14   144-182      6.68  390.74  0.00034       15.0%     54.19
  WD 5:  Seg 19   194-231      8.15  451.47  5.1e-05       25.0%     47.38
  WD 6:  Seg 22   238-276      8.21  453.75  4.8e-05       25.0%     50.56
  WD 7:  Seg 26   280-318      7.77  435.75  8.3e-05       17.5%     53.72
  WD 8:  Seg 30   324-362      7.85  438.93  7.6e-05       20.0%     51.55
  WD 9:  Seg 35   377-423      5.31  334.03  0.00196       17.5%     44.23
  WD10:  Seg 39   434-474      6.63  388.37  0.00036       27.5%     46.74
  WD11:  Seg 42   475-525      5.85  356.35  0.00098       30.0%     54.74
  WD12:  Seg 46   529-569      7.11  408.33  0.00020       20.0%     58.19
  WD13:  Seg 50   573-611      3.10  242.76  0.03282        7.5%     15.19
  WD14:  Seg 54   612-651      3.60  263.45  0.01740       17.5%     30.22
Multiple sequence alignment of 14 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-43     ENI------------RVVRC--GGSELNFRRAVFS--A----DSK-YIFCVSG--------D-FVKVYS
   WD 2   47-86     -EE------------CVHIL--HGHRNLVTGIQLN--P----NNHLQLYSCSL--------DGTIKLWD
   WD 3   90-130    -GI------------LIKTFIVGCKLHALFTLAQA--E----DSV-FVIVNKE--------KPDIFQLV
   WD 4  144-182    AKE------------LSFVL--DYINQSPKCIAFG--N----EGV-YVAAVRE--------F-YLSVYF
   WD 5  194-231    --S------------SSRNK--KHAKNNFTCVACH--P----TED-CIASGHM--------DGKIRLWR
   WD 6  238-276    -KY------------TYTCL--HWHHDMVMDLAFS--V----TGT-SLLSGGR--------ESVLVEWR
   WD 7  280-318    -EK------------NKEFL--PRLGATIEHISVS--P----AGD-LFCTSHS--------DNKIIIIH
   WD 8  324-362    -SA------------VIQGL--VKDRSIFTGLMID--P----RTK-ALVLNGK--------PGHLQFYS
   WD 9  377-423    -QE------------YINDY--GLIQIELTKAAFG--C----FGN-WLATVEQRQEKETELELQMKLWM
   WD10  434-474    N---------------TKIN--MPHEDCITALCFC--NAEKSEQP-TLVTASK--------DGYFKVWI
   WD11  475-525    LTDDSDIYKKAVGWTCDFVG--SYHKYQATNCCFS--E----DGS-LLAV-SF--------EEIVTIWD
   WD12  529-569    -WE------------LKCTF--CQRAGKIRHLCFGRLT----CSK-YLLGATE--------NGILCCWN
   WD13  573-611    -CA------------LEWNA--KLNVRVMEPDPNS--E----NIA-AISQSSV--------GSDLFVFK
   WD14  612-651    PSE---------PRPLYIQK--GISREKVQWGVFV--P----RDV-PESFTSE--------A---YQWL

   WD40 Template    TGE------------CLRTL--SGHTSGVTSVSFS--P----DGK-RLVSGSE--------DGTIKVWD


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Last modified: 09 Jan 2019