WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000312758    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000312758 (Len=1129)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000312758, Len=1129):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFVPVIPESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEGWKHRLFLSHREGAISQV 80  
WD40-rpts                                                                     (________________

Query       81 ACCLHDDDYVAVATSQGLVVVWELNQERRGKPEQMYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKA 160 
WD40-rpts      _WD 1_________________) (_____________________WD 2____________________)         

Query      161 AAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCAR 240 
WD40-rpts                                                                                      

Query      241 PGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSEHCVLTWTERGIYIFIPQNVQ 320 
WD40-rpts                                                                                      

Query      321 VLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEH 400 
WD40-rpts                                                                                      

Query      401 LKSQLDHGTYNDLISQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDER 480 
WD40-rpts                                                                                      

Query      481 FKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTL 560 
WD40-rpts                                                                                      

Query      561 HTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVL 640 
WD40-rpts                                                                                      

Query      641 QEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDL 720 
WD40-rpts                                                                                      

Query      721 FQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKKYFFLLNLKRAKESIKLSYSN 800 
WD40-rpts                                                                                      

Query      801 SPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDII 880 
WD40-rpts                                                                                      

Query      881 QLCHHHPAEFLAYLDSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLI 960 
WD40-rpts                                                                                      

Query      961 LHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSLMEGDNGWIPETVEEWKLLLHLIQSKS 1040
WD40-rpts                                                                                      

Query     1041 TRPAPQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKC 1120
WD40-rpts                                                                                      

Query     1121 DRFLWSQQA 1129
WD40-rpts               



2 WD40-repeats found in QUERY=ENSP00000312758 (Len=1129):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    64-103      3.74  269.13  0.01461       17.5%     51.60
  WD 2:  Seg  8   105-151      3.73  268.94  0.01469       15.0%     52.32
Multiple sequence alignment of 2 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   64-103    -WK-------HRLFLSHREGAISQVACCLHDDDYVAVATSQGLVVVWE
   WD 2  105-151    NQERRGKPEQMYVSSEHKGRRVTALCWDT-AILRVFVGDHAGKVSAIK

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019