Input parameters:
Query = ENSP00000311258 (Len=518)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000311258, Len=518):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSCQKAVLELNIGSQLGPKSPERTEGVTAFEDYGTGLLENQLSVGDFVKIQKAFESPQPRKIICMSREDFTQKMTEIVGW 80
WD40-rpts
Query 81 GTKEEYGELFDKVDVAQDGFINWDKLTSFILLELYEQDERAKATVVPQWKDLEFLPVKHKDTIQKVIFLKNSSHYLTISK 160
WD40-rpts (_________________WD 1_________
Query 161 EGLLAIWGEHLKLQETFPITSDATKLKHLWVTSLVSLENVNKIAVAFTSKEVCFYDLLSKEEFACQYKLQGLKGTPICMD 240
WD40-rpts _______) (_______________WD 2_______________)
Query 241 YWYDPLDANESILSFGDITGKVQAIAFTAALISLFERPASACEDGEATMTINWAELLSGCHKCCHILEHKLHQGDWVRQV 320
WD40-rpts (_________________WD 3_________________) (________________
Query 321 TYNASLDAIISSTTSNTNSVVMAWREKSKKRLNMTSFNIAQGIHAFDYHSRLNLIATAGINNKVCLWNPYVVSKPVGVLW 400
WD40-rpts __WD 4__________________) (_________________WD 5________________) (_______
Query 401 GHSASVIAVQFFVERKQLFSFSKDKVLRLWDIQHQLSIQRIACSFPKSQDFRCLFHFDEAHGRLFISFNNQLALLAMKSE 480
WD40-rpts __________WD 6________________) (___________________WD 7__________________) (_
Query 481 ASKRVKSHEKAVTCVLYNSILKQPSQCEDDTNEDPYDN 518
WD40-rpts ________________WD 8________________)
8 WD40-repeats found in QUERY=ENSP00000311258 (Len=518):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 130-168 7.84 438.71 7.6e-05 15.0% 50.18
WD 2: Seg 7 181-216 6.22 371.41 0.00061 10.0% 42.68
WD 3: Seg 13 262-301 6.15 368.53 0.00067 10.0% 15.67
WD 4: Seg 16 304-345 6.20 370.97 0.00062 15.0% 55.69
WD 5: Seg 20 350-388 6.26 373.21 0.00058 7.5% 51.77
WD 6: Seg 24 393-431 9.33 500.05 1.1e-05 32.5% 55.11
WD 7: Seg 28 435-477 4.53 301.63 0.00535 7.5% 54.35
WD 8: Seg 31 479-517 7.85 439.03 7.5e-05 20.0% 44.68
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 130-168 -KDLEFLPVKH----KDTIQKVIFLKNSSHYLTISKEGL---LAIWG
WD 2 181-216 SD----ATKLK----HLWVTSLVSLENVNKIAVAFTSKE---VCFYD
WD 3 262-301 VQAIAFTAALI----SLFERPASACEDGEATMTINWAEL---LSGCH
WD 4 304-345 -CHILEHKLHQ----GDWVRQVTYNASLDAIISSTTSNTNSVVMAWR
WD 5 350-388 -KRLNMTSFNI----AQGIHAFDYHSRLNLIATAGINNK---VCLWN
WD 6 393-431 -SKPVGVLWGH----SASVIAVQFFVERKQLFSFSKDKV---LRLWD
WD 7 435-477 -QLSIQRIACSFPKSQDFRCLFHFDEAHGRLFISFNNQL---ALLAM
WD 8 479-517 -SEASKRVKSH----EKAVTCVLYNSILKQPSQCEDDTN---EDPYD
WD40 Template TGECLRTLSGH----TSGVTSVSFSPDGKRLVSGSEDGT---IKVWD