WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000309690 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000309690 (Len=3027) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000309690, Len=3027): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNLHQVLTGAVNPGDHCFSVGSIGDQRFTAYASGCDIVILGSDFERLQIIPGAKHGNIQVGCVDCSMQQGKIAASYGNVI 80
WD40-rpts
Query 81 SIFEPVNLPKQKKNLELYSQWQKSGQFFLESIAHNITWDPTGSRLLTGSSYLQLWSNTNLEKPTEDENLNKTDLNFGDWK 160
WD40-rpts
Query 161 CIWHCKTASQVHLMKFSPDGEFFATAGKDDCLLKVWYNVENWRTAVTSPDGSSEKQSQGEIDFSFVYLAHPRAVNGFSWR 240
WD40-rpts (_____________WD 1_____________)
Query 241 KTSKYMPRASVCNVLLTCCKDNVCRLWVETFLPNDCLLYGGDCSHWTESINLTNNFKRNASSKERVQNALEVNLRHFRRG 320
WD40-rpts
Query 321 RRRSLALVAHTGYLPHQQDPHHVHRNTPLHANALCHFHIAASINPATDIPLLPSITSLSLNENEEKTGPFVVHWLNNKEL 400
WD40-rpts
Query 401 HFTLSMEVFLQQLRKSFEQPSSEASVEDSNQADVKSDEETDDGVDDLKINPEKKELGCDKMVPNSSFTSLSSAAIDHQIE 480
WD40-rpts
Query 481 VLLSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLCKSIMMYACTKNVDLAIQ 560
WD40-rpts
Query 561 QGKQKPSGLTRSTSMLISSGHNKSSNSLKLSIFTPNVMMISKHADGSLNQWLVSFAEESAFSTVLSISHKSRYCGHRFHL 640
WD40-rpts
Query 641 NDLACHSVLPLLLTTSHHNALRTPDVDNPEQPFDALNIEECSLTQQNKSTVDVAFQDPSAVYSELILWRVDPVGPLSFSG 720
WD40-rpts
Query 721 GVSELARINSLHVSAFSNVAWLPTLIPSYCLGAYCNSPSACFVASDGQYLRLYEAVIDAKKLLSELSNPEISKYVGEVFN 800
WD40-rpts
Query 801 IVSQQSTARPGCIIALDPITKLHGRKTQLLHVFEEDFILNNLEKKSLGKDSILSNAGSSPNGFSEKFYLIVIECTQDNRS 880
WD40-rpts
Query 881 LLHMWNLHLKSIPVSLDEKVDTKLSEAVWQPEEHYSSSPEKILSPFSQKYQACRANLQSTSRLTLFSEMVYSQELHLPEG 960
WD40-rpts
Query 961 VEIISIKPSAGHLSSSSIYPACSAPYLLATSCSDEKVRFWRCRVTDGESATSKNGKIDLAYIWEEWPLLIEDGLQSNSSI 1040
WD40-rpts (_______________WD 2______________)
Query 1041 TVPGRPVEVSCAHTNRLAVAYKQPASNSRSSQDFVMHVSIFECESTGGSCWVLEQTIHLDELSTVLDSGISVDSNLVAYN 1120
WD40-rpts
Query 1121 KQDMYLSSKENITSNTKHLVHLDWMSREDGSHILTVGIGSKLFMYGPLAGKVQDQTGKETLAFPLWESTKVVPLSKFVLL 1200
WD40-rpts
Query 1201 RSVDLVSSVDGSPPFPVSLSWVRDGILVVGMDCEMHVYCQWQPSSKQEPVITDSYSGSTPSITSLIKQSNSSSGLHPPKK 1280
WD40-rpts
Query 1281 TLTRSMTSLAQKICGKKTAFDPSVDMEDSGLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIAGEVVAL 1360
WD40-rpts
Query 1361 NEAESNHERRLRSLTISASGSTTRDPQAFNKAENTDYTEIDSVPPLPLYALLAADDDSCYSSLEKSSNESTLSKSNQLSK 1440
WD40-rpts
Query 1441 ESYDELFQTQLLMTDTHMLETDEENTKPRVIDLSQYSPTYFGPEHAQVLSGHLLHSSLPGLSRMEQMSLMALADTIATTS 1520
WD40-rpts
Query 1521 TDIGESRDRSQGGETLDECGLKFLLAVRLHTFLTTSLPAYRAQLLHQGLSTSHFAWAFHSVAEEELLNMLPAMQKDDPTW 1600
WD40-rpts
Query 1601 SELRAMGVGWWVRNTRILRKCIEKVAKAAFYRKNDPLDAAIFYLAMKKKAVIWGLYRAEKNTRMTQFFGHNFEDERWRKA 1680
WD40-rpts
Query 1681 ALKNAFSLLGKQRFEHSAAFFLLAGCLRDAIEVCLEKLNDIQLALVIARLYESEFDTSAAYKSILRKKVLGIDSPVSELC 1760
WD40-rpts
Query 1761 SLNINMHHDPFLRSMAYWILEDYSGALETLIKQPIRENDDQVLSASNPTVFNFYNYLRTHPLLLRRHFGSSDTFSTHMSL 1840
WD40-rpts
Query 1841 TGKSGLAGTINLSERRLFFTTASAHLKAGCPMLALEVLSKMPKVIKKTRPFYRASSFLDTSKDCSPSSPLKLDAREDKSS 1920
WD40-rpts
Query 1921 AVDWSQSLINGFGSSSEGSSEKQSNSTLSFDWSQPSVVFQDDSLELKWDSDNDEENEDVPISMKELKPLQRKTDKKLDDI 2000
WD40-rpts
Query 2001 SSNYTESFSTLDENDLLNPSEDIIAVQLKFRACLKILTVELRTLSTGYEIDGGKLRYQLYHWLEKEVIALQRTCDFCSDA 2080
WD40-rpts
Query 2081 EELQSAFGRNEDEFGLNEDAEDLPHQTKVKQLRENFQEKRQWLLKYQSLLRMFLSYCILHGSHGGGLASVRMELILLLQE 2160
WD40-rpts
Query 2161 SQQETSEPLFSSPLSEQTSVPLLFACTANAKTVVANPLLHLSNLTHDILHAIINFDSPPHPDIQSNKVYVMHTLAASLSA 2240
WD40-rpts
Query 2241 CIYQCLCGSHNYSSFQTNQFTGMVYQTVLLPHRPSLKTGSLDEALTPNTSPAQWPGITCLIRLLNSSGEEAQSGLTVLLC 2320
WD40-rpts
Query 2321 EILTAVYLSLFIHGLATHSSNELFRIVAHPLNEKMWSAVFGGGAHVPSKEQTHSKTLPVSSLVEEGEKQNKRFRPSKMSC 2400
WD40-rpts
Query 2401 RESAPLTPSSAPVSQESLAVKEKFIPPELSIWDYFIAKPFLPSSQSRAEYDSEESLGSDDDDNDDDDDVLASDFHLQEHS 2480
WD40-rpts
Query 2481 NSNSYSWSLMRLAMVQLVLNNLKTFYPFAGHDLAELPVSSPLCHAVLKTLQCWEQVLLRRLEIHGGPPQNYIASHTAEES 2560
WD40-rpts
Query 2561 LSAGPAILRHKALLEPTNTPFKSKHHLALSVKRLWQYLVKQEEIQETFIKNIFTKKRCLNEIEADLGYPGGKARIIHKES 2640
WD40-rpts
Query 2641 DIITAFAVNKANRNCIAIASSHDVQELDVSGILATQVYTWVDDDIEVETKGSEDFLVIHARDDLTAVQGTTPYTHSNPGT 2720
WD40-rpts (____________
Query 2721 PINMPWLGSTQTGRGASVMIKKAINNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRSGGNSRVTRMRFNYQGN 2800
WD40-rpts __________________WD 3_____________________________)(___________________WD 4____
Query 2801 KFGIVDADGYLSLYQTNWKCCPVTGSMPKPYLTWQCHNKTANDFVFVSSSSLIATAGLSTDNRNVCLWDTLVAPANSLVH 2880
WD40-rpts ______________)(________________________WD 5________________________) (____
Query 2881 AFTCHDSGATVLAYAPKHQLLISGGRKGFTYVFDLCQRQQRQLFQSHDSPVKAVAVDPTEEYFVTGSAEGNIKIWSLSTF 2960
WD40-rpts _____________WD 6________________) (_________________WD 7________________)
Query 2961 GLLHTFVSEHARQSIFRNIGTGVMQIETGPANHIFSCGADGTMKMRILPDQFSPLNEVLKNDVKFML 3027
WD40-rpts
 7 WD40-repeats found in QUERY=ENSP00000309690 (Len=3027): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 14 166-197 3.74 269.18 0.01459 30.0% 32.47 WD 2: Seg 41 967-1001 3.04 240.20 0.03548 15.0% 25.62 WD 3: Seg 70 2708-2772 3.77 270.21 0.01413 17.5% 45.48 WD 4: Seg 73 2773-2815 5.24 330.93 0.00216 25.0% 54.54 WD 5: Seg 77 2816-2869 3.36 253.55 0.02358 15.0% 47.67 WD 6: Seg 81 2876-2914 6.70 391.33 0.00033 27.5% 45.36 WD 7: Seg 84 2918-2956 7.34 417.78 0.00015 30.0% 50.31Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 166-197 ---------------------------------------------KTASQVHLMKFSPDGEFFATAG---KDDCLLKVWY WD 2 967-1001 KP-----------S------------------------------AGHLSSSSIYPACSAPYLLAT-S---CSDEKVRFWR WD 3 2708-2772 QG-----------TTPYTHSNPGTPINMPWLGSTQTGRGASVMIKKAINNVRRMTSHPTLPYYLT-G---AQDGSVRMFE WD 4 2773-2815 WG--------HSQQITCF-------------------------RSGGNSRVTRMRFNYQGNKFGI-V---DADGYLSLYQ WD 5 2816-2869 TNWKCCPVTGSMPKPYLT-------------------------WQCHNKTANDFVFVSSSSLIAT-AGLSTDNRNVCLWD WD 6 2876-2914 -N-----------SLVHA-------------------------FTCHDSGATVLAYAPKHQLLIS-G---GRKGFTYVFD WD 7 2918-2956 -R-----------QQRQL-------------------------FQSHDSPVKAVAVDPTEEYFVT-G---SAEGNIKIWS WD40 Template TG-----------ECLRT-------------------------LSGHTSGVTSVSFSPDGKRLVS-G---SEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |