Input parameters:
Query = ENSP00000308931 (Len=366)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000308931, Len=366):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAAAARWNHVWVGTETGILKGVNLQRKQAANFTAGGQPRREEAVSALCWGTGGETQMLVGCADRTVKHFSTEDGIFQGQ 80
WD40-rpts (_________________WD 1_________________) (___
Query 81 RHCPGGEGMFRGLAQADGTLITCVDSGILRVWHDKDKDTSSDPLLELRVGPGVCRMRQDPAHPHVVATGGKENALKIWDL 160
WD40-rpts _____________WD 2_______________) (_________________WD 3________________)
Query 161 QGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLPGSQKLVTCTGYHQVRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGN 240
WD40-rpts (__________________WD 4_________________)(___________________WD 5_____
Query 241 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKDEPQEPQEPNKVP 320
WD40-rpts ______________) (_________________WD 6________________)(______________WD 7____
Query 321 LEDTETDELWASLEAAAKRKLSGLEQPQGALQTRRRKKKRPGSTSP 366
WD40-rpts __________)
7 WD40-repeats found in QUERY=ENSP00000308931 (Len=366):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 32-71 6.50 383.36 0.00042 15.0% 45.29
WD 2: Seg 6 77-113 6.13 368.02 0.00068 15.0% 54.00
WD 3: Seg 10 121-159 7.99 444.61 6.3e-05 15.0% 53.01
WD 4: Seg 15 171-211 6.47 381.73 0.00045 17.5% 41.89
WD 5: Seg 18 212-255 7.73 433.85 8.8e-05 15.0% 56.43
WD 6: Seg 22 259-297 8.93 483.38 1.9e-05 22.5% 58.58
WD 7: Seg 26 298-331 4.76 311.22 0.00397 10.0% 10.04
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 32-71 -N----FTAGGQP-RREEAVSALCWGTGGETQMLVGCADRTVKHFS
WD 2 77-113 -F----QGQRHCP-GGEGMFRGLAQADG---TLITCVDSGILRVWH
WD 3 121-159 -S----DPLLELR-VGPGVCRMRQDPAHPH-VVATGGKENALKIWD
WD 4 171-211 KN----VRNDWLDLRVPIWDQDIQFLPGSQ-KLVTCTGYHQVRVYD
WD 5 212-255 PASPQRRPVLETT-YGEYPLTAMTLTPGGN-SVIVGNTHGQLAEID
WD 6 259-297 -G----RLLGCLK-GLAGSVRGLQCHPSKP-LLASCGLDRVLRIHR
WD 7 298-331 ----------IQN-PRGLEHKDEPQEPQEP-NKVPLEDTETDELWA
WD40 Template TG----ECLRTLS-GHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD