WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000308931    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000308931 (Len=366)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000308931, Len=366):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAAAARWNHVWVGTETGILKGVNLQRKQAANFTAGGQPRREEAVSALCWGTGGETQMLVGCADRTVKHFSTEDGIFQGQ 80  
WD40-rpts                                     (_________________WD 1_________________)     (___

Query       81 RHCPGGEGMFRGLAQADGTLITCVDSGILRVWHDKDKDTSSDPLLELRVGPGVCRMRQDPAHPHVVATGGKENALKIWDL 160 
WD40-rpts      _____________WD 2_______________)       (_________________WD 3________________) 

Query      161 QGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLPGSQKLVTCTGYHQVRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGN 240 
WD40-rpts                (__________________WD 4_________________)(___________________WD 5_____

Query      241 SVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKDEPQEPQEPNKVP 320 
WD40-rpts      ______________)   (_________________WD 6________________)(______________WD 7____

Query      321 LEDTETDELWASLEAAAKRKLSGLEQPQGALQTRRRKKKRPGSTSP 366 
WD40-rpts      __________)                                   



7 WD40-repeats found in QUERY=ENSP00000308931 (Len=366):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    32-71       6.50  383.36  0.00042       15.0%     45.29
  WD 2:  Seg  6    77-113      6.13  368.02  0.00068       15.0%     54.00
  WD 3:  Seg 10   121-159      7.99  444.61  6.3e-05       15.0%     53.01
  WD 4:  Seg 15   171-211      6.47  381.73  0.00045       17.5%     41.89
  WD 5:  Seg 18   212-255      7.73  433.85  8.8e-05       15.0%     56.43
  WD 6:  Seg 22   259-297      8.93  483.38  1.9e-05       22.5%     58.58
  WD 7:  Seg 26   298-331      4.76  311.22  0.00397       10.0%     10.04
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   32-71     -N----FTAGGQP-RREEAVSALCWGTGGETQMLVGCADRTVKHFS
   WD 2   77-113    -F----QGQRHCP-GGEGMFRGLAQADG---TLITCVDSGILRVWH
   WD 3  121-159    -S----DPLLELR-VGPGVCRMRQDPAHPH-VVATGGKENALKIWD
   WD 4  171-211    KN----VRNDWLDLRVPIWDQDIQFLPGSQ-KLVTCTGYHQVRVYD
   WD 5  212-255    PASPQRRPVLETT-YGEYPLTAMTLTPGGN-SVIVGNTHGQLAEID
   WD 6  259-297    -G----RLLGCLK-GLAGSVRGLQCHPSKP-LLASCGLDRVLRIHR
   WD 7  298-331    ----------IQN-PRGLEHKDEPQEPQEP-NKVPLEDTETDELWA

   WD40 Template    TG----ECLRTLS-GHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019