WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000301725    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000301725 (Len=217)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000301725, Len=217):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHAPWSPGASSRARAGHTMNTSPGTVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAG 80  
WD40-rpts             (_________________WD 1_________________)   (________________WD 2_________

Query       81 YQHIRMYDLNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQA 160 
WD40-rpts      _______)(___________________WD 3___________________)(___________________WD 4____

Query      161 ELIVGDQSGAIHIWDLKTDHNEQLIPEPEVSITSAHIDPDASYMAAVNSTAPRHLLG 217 
WD40-rpts      ______________)   (_________________WD 5________________)



5 WD40-repeats found in QUERY=ENSP00000301725 (Len=217):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       9.49  506.76  9.2e-06       25.0%     51.52
  WD 2:  Seg  5    51-88       8.01  445.48  6.2e-05       25.0%     54.52
  WD 3:  Seg  9    89-132      9.55  509.30  8.5e-06       30.0%     53.08
  WD 4:  Seg 13   133-175      8.86  480.70  2.1e-05       20.0%     53.23
  WD 5:  Seg 17   179-217      8.07  447.85  5.7e-05       10.0%     47.82
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    8-47     PG----A---SSRARAGHTMNTSPGTVGSDPVILATAGYDHTVRFWQ
   WD 2   51-88     -G----I---CTRTVQHQDSQVNALEVTPDRSMIAAAG-YQHIRMYD
   WD 3   89-132    LNSNNPN---PIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWD
   WD 4  133-175    LR----SRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWD
   WD 5  179-217    -D----H---NEQLIPEPEVSITSAHIDPDASYMAAVNSTAPRHLLG

   WD40 Template    TG----E---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019