WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000296126    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000296126 (Len=187)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000296126, Len=187):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSENKEKSAV 80  
WD40-rpts                      (________________________WD 1_______________________)           

Query       81 MSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFEHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFC 160 
WD40-rpts           (______________WD 2______________)         (_______________________WD 3____

Query      161 SDKMSLLLVYGSWFQPTIERVALNSRE 187 
WD40-rpts      __________________)        



3 WD40-repeats found in QUERY=ENSP00000296126 (Len=187):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    17-69       6.76  393.86  0.00031       27.5%     43.09
  WD 2:  Seg  8    86-119      5.11  325.84  0.00253       15.0%     35.89
  WD 3:  Seg 12   129-179      2.84  232.14  0.04534       15.0%     40.11
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   17-69     -KEVYRHFTGHATP-----------VSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQ
   WD 2   86-119    TDE------PVYID-----------LTLSENKEEPVK--------------LAVVCRDGQVHLFE
   WD 3  129-179    PLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMS--------------LLLVYGSWFQPTIE

   WD40 Template    TGECLRTLSGHTSG-----------VTSVSFSPDGKR--------------LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019