Input parameters:
Query = ENSP00000296126 (Len=187)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000296126, Len=187):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSENKEKSAV 80
WD40-rpts (________________________WD 1_______________________)
Query 81 MSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFEHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFC 160
WD40-rpts (______________WD 2______________) (_______________________WD 3____
Query 161 SDKMSLLLVYGSWFQPTIERVALNSRE 187
WD40-rpts __________________)
3 WD40-repeats found in QUERY=ENSP00000296126 (Len=187):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 17-69 6.76 393.86 0.00031 27.5% 43.09
WD 2: Seg 8 86-119 5.11 325.84 0.00253 15.0% 35.89
WD 3: Seg 12 129-179 2.84 232.14 0.04534 15.0% 40.11
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 17-69 -KEVYRHFTGHATP-----------VSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQ
WD 2 86-119 TDE------PVYID-----------LTLSENKEEPVK--------------LAVVCRDGQVHLFE
WD 3 129-179 PLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMS--------------LLLVYGSWFQPTIE
WD40 Template TGECLRTLSGHTSG-----------VTSVSFSPDGKR--------------LVSGSEDGTIKVWD