WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000295122    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000295122 (Len=262)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000295122, Len=262):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 80  
WD40-rpts            (________________WD 1________________)          (__________________WD 2___

Query       81 VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 160 
WD40-rpts      ______________)  (__________________WD 3__________________)        (____________

Query      161 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 240 
WD40-rpts      _____WD 4_________________)                    (__________________WD 5__________

Query      241 FDQTCSEHRSFLLSLESCLQTA 262 
WD40-rpts      ________)             



5 WD40-repeats found in QUERY=ENSP00000295122 (Len=262):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-44       7.48  423.81  0.00012       30.0%     27.56
  WD 2:  Seg  7    55-95       6.21  371.12  0.00062       17.5%     43.91
  WD 3:  Seg 10    98-139      6.67  390.28  0.00034       30.0%     55.17
  WD 4:  Seg 14   148-187      6.75  393.58  0.00031       20.0%     47.18
  WD 5:  Seg 20   208-249      6.63  388.60  0.00036       27.5%     45.72
Multiple sequence alignment of 5 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    7-44     KG-H--KEIINAIDGIGGLGIG----EG---APE-I-VTGSRDGTVKVWD
   WD 2   55-95     ----MEPVQGENKRDCWTVAFGNAYNQE---ERV-V-CAGYDNGDIKLFD
   WD 3   98-139    -N-MALRWETNIKNGVCSLEFD----RKDISMNK-L-VATSLEGKFHVFD
   WD 4  148-187    -G-FASVSEKAHKSTVWQVRHL----PQ---NRELF-LTAGGAGGLHLWK
   WD 5  208-249    GSVSLLQNVTLSTQPISSLDWS----PD---KRG-LCVCSSFDQTCSEHR

   WD40 Template    TG-ECLRTLSGHTSGVTSVSFS----PD---GKR-L-VSGSEDGTIKVWD


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Last modified: 09 Jan 2019