WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000295121    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000295121 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000295121, Len=357):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ 80  
WD40-rpts                    (_______________WD 1_______________)(____________________WD 2_____

Query       81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ 160 
WD40-rpts      _______________)           (________________WD 3________________)(______________

Query      161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 
WD40-rpts      _________WD 4______________________)  (__________________WD 5__________________)

Query      241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 
WD40-rpts              (_________________WD 6_________________)                      (_________

Query      321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI 357 
WD40-rpts      ________WD 7_________________)       



7 WD40-repeats found in QUERY=ENSP00000295121 (Len=357):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    15-50       4.87  315.97  0.00343       15.0%     36.25
  WD 2:  Seg  4    51-96       5.91  358.77  0.00091       17.5%     57.59
  WD 3:  Seg  9   108-145      7.32  417.20  0.00015       30.0%     32.39
  WD 4:  Seg 13   146-196      6.26  373.25  0.00058       15.0%     43.18
  WD 5:  Seg 16   199-240      7.08  407.19  0.00020       30.0%     55.80
  WD 6:  Seg 20   249-288      7.02  404.74  0.00022       20.0%     53.10
  WD 7:  Seg 25   311-350      7.79  436.61  8.1e-05       30.0%     52.54
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   15-50     --------------KGFN-----YTVFDCKW---VPCS---AK-F-VTMGNFARGTGVIQLYE
   WD 2   51-96     IQH---GDLKLLREIEKA-----KPIKCGTFGATSLQQ---RY-L-AT----GDFGGNLHIWN
   WD 3  108-145    KGH--------KEIINAI-----DGIGGLGI---GEGA---PE-I-VT----GSRDGTVKVWD
   WD 4  146-196    PRQKDDPVANMEPVQGENKRDCWTVAFGNAY---NQEE---RV-V-CA----GYDNGDIKLFD
   WD 5  199-240    -NM------ALRWETNIK-----NGVCSLEF---DRKDISMNK-L-VA----TSLEGKFHVFD
   WD 6  249-288    -GF------ASVSEKAHK-----STVWQVRH---LPQN---RELF-LT----AGGAGGLHLWK
   WD 7  311-350    -VS------LLQNVTLST-----QPISSLDW---SPDK---RG-LCVC----SSFDQTVRVLI

   WD40 Template    TGE------CLRTLSGHT-----SGVTSVSF---SPDG---KR-L-VS----GSEDGTIKVWD


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Last modified: 09 Jan 2019