WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000295024    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000295024 (Len=514)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000295024, Len=514):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDG 80  
WD40-rpts                                                                                      

Query       81 KVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQ 160 
WD40-rpts                                                                                      

Query      161 AVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPD 240 
WD40-rpts                                           (_________________WD 1________________)    

Query      241 THLLKLLKTLEGHAYGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQR 320 
WD40-rpts         (__________________WD 2_________________)   (_________________WD 3___________

Query      321 GQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVAT 400 
WD40-rpts      ______)  (________________WD 4_______________)(__________________WD 5___________

Query      401 QGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPS 480 
WD40-rpts      ______)   (__________________WD 6__________________)   (_________________WD 7___

Query      481 MMASASDDGTVRIWGPAPFIDHQNIEEECSSMDS 514 
WD40-rpts      ______________)                   



7 WD40-repeats found in QUERY=ENSP00000295024 (Len=514):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   198-236      8.91  482.60  1.9e-05       32.5%     50.92
  WD 2:  Seg  6   244-284      8.28  456.62  4.4e-05       35.0%     53.96
  WD 3:  Seg 10   288-327      8.58  469.07  3.0e-05       40.0%     55.90
  WD 4:  Seg 14   330-366      6.75  393.64  0.00031       20.0%     54.37
  WD 5:  Seg 18   367-407      7.68  432.08  9.3e-05       15.0%     52.74
  WD 6:  Seg 22   411-452      7.44  422.13  0.00013       27.5%     53.55
  WD 7:  Seg 26   456-495      8.77  476.76  2.3e-05       35.0%     52.72
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  198-236    -CYTQ-QILT-EHCNE---VWFCKFSND-GTKLATGSKDTT--VIIWQ
   WD 2  244-284    -LKLL-KTLE-GHAYG---VSYIAWSPD-DNYLVACGPDDCSELWLWN
   WD 3  288-327    -GELR-TKMSQSHEDS---LTSVAWNPD-GKRFVTGGQRGQ--FYQCD
   WD 4  330-366    -GNLL-DSWE-GVR-----VQCLWCLSD-GKTVLASDTHQR--IRGYN
   WD 5  367-407    FEDLTDRNIV-QEDHP---IMSFTISKN-GRLALLNVATQG--VHLWD
   WD 6  411-452    -RVLV-RKYQ-GVTQGFYTIHSCFGGHN-EDFIASGSEDHK--VYIWH
   WD 7  456-495    -ELPI-AELT-GHTRT---VNCVSWNPQIPSMMASASDDGT--VRIWG

   WD40 Template    TGECL-RTLS-GHTSG---VTSVSFSPD-GKRLVSGSEDGT--IKVWD


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Last modified: 09 Jan 2019