WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000282032    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000282032 (Len=260)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000282032, Len=260):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMDPCSVGVQLRTTNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHVKIYIDRFEDLQKSCCDPFN 80  
WD40-rpts                   (________________________________________________WD 1______________

Query       81 IHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWKLCPKCTQIINGSVDVDTEDRQKRKPESDGRTAKALRSLQFTNPGRQ 160 
WD40-rpts      _________________________________)                                              

Query      161 TEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYDSQGLLIFSGMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRK 240 
WD40-rpts                                                                                      

Query      241 WLYEQIEIEGGEIIHNKHAG 260 
WD40-rpts                          



1 WD40-repeats found in QUERY=ENSP00000282032 (Len=260):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-114      3.15  244.75  0.03088       30.0%     10.51
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   14-114    TNECHKTYYTRHTGFKTLQELSSNDMLLLQLRTGMTLSGNNTICFHHVKIYIDRFEDLQKSCCDPFNIHKKLAKKNLHVIDLDDATFLSAKFGRQLVPGWK

   WD40 Template    TGECLRTL-SGHTSGV-----TSVS-------------------------FS----------PDG----------KRLVSGSEDGT----------IKVWD


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Last modified: 09 Jan 2019