Input parameters:
Query = ENSP00000273612 (Len=1507)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000273612, Len=1507):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTTVVVHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSQLIEKETEEYRKGDPDPFDDRHPGRADPECMLGHLLRILFK 80
WD40-rpts
Query 81 NDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDI 160
WD40-rpts
Query 161 AANYRDENSQLVAIVLRRLRELQLQEVALRQENKRPSPRKLSSEPLLPLDEEAVDMDYGDMAVDVVDGDQEEASGDMEIS 240
WD40-rpts
Query 241 FHLDSGHKTSSRVNSTTKPEDGGLKKNKSAKQGDRENFRKAKQKLGFSSSDPDRMFVELSNSSWSEMSPWVIGTNYTLYP 320
WD40-rpts
Query 321 MTPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMFYIDLKQTNDVLLTFEALKHLATLFLSLFFAEHLVAQAGLRRL 400
WD40-rpts
Query 401 DSSTPPTMASTGVQRCLFCLVFMQDSFLQVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRY 480
WD40-rpts
Query 481 DGLRRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKA 560
WD40-rpts
Query 561 CSYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLLLQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQL 640
WD40-rpts
Query 641 AESVDVLDEAGSTVSTVGISIILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQNPKSSEH 720
WD40-rpts
Query 721 TLAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSSCQIQQLMKEPVLQDKRS 800
WD40-rpts
Query 801 DHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRISFPEKELLLLIRNHLISKGLGETATVLTKEADLPMTA 880
WD40-rpts
Query 881 ASHSSAFTPVTAAASPVSLPRTPRIANGIATRLGSHAAVGASAPSAPTAHPQPRPPQGPLALPGPSYAGNSPLIGRISFI 960
WD40-rpts
Query 961 RERPSPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEP 1040
WD40-rpts
Query 1041 KQRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLY 1120
WD40-rpts (_________________WD 1________________
Query 1121 NVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIA 1200
WD40-rpts ) (__________________WD 2_________________)(_________________WD 3_____________
Query 1201 HIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIW 1280
WD40-rpts ___)
Query 1281 DLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDDLMEERMKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTD 1360
WD40-rpts
Query 1361 TKDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEED 1440
WD40-rpts
Query 1441 DNNENAGEDGDNDFSPSDEELANLLEEGEDGEDEDSDADEEVELILGDTDSSDNSDLEDDIILSLNE 1507
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000273612 (Len=1507):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 10 1083-1121 6.03 363.73 0.00078 25.0% 50.56
WD 2: Seg 14 1125-1165 5.17 328.30 0.00234 22.5% 48.94
WD 3: Seg 18 1166-1204 5.00 321.00 0.00294 15.0% 44.27
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1083-1121 ISVFREANEDESGFTCCAFSARERFLMLGT--CTGQLKLYN
WD 2 1125-1165 GQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWG
WD 3 1166-1204 MKSVFDMKHSFTEDHYVEFSKHSQDRVIGT--KGDIAHIYD
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGS--EDGTIKVWD