WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000273612    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000273612 (Len=1507)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000273612, Len=1507):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTVVVHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSQLIEKETEEYRKGDPDPFDDRHPGRADPECMLGHLLRILFK 80  
WD40-rpts                                                                                      

Query       81 NDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDI 160 
WD40-rpts                                                                                      

Query      161 AANYRDENSQLVAIVLRRLRELQLQEVALRQENKRPSPRKLSSEPLLPLDEEAVDMDYGDMAVDVVDGDQEEASGDMEIS 240 
WD40-rpts                                                                                      

Query      241 FHLDSGHKTSSRVNSTTKPEDGGLKKNKSAKQGDRENFRKAKQKLGFSSSDPDRMFVELSNSSWSEMSPWVIGTNYTLYP 320 
WD40-rpts                                                                                      

Query      321 MTPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMFYIDLKQTNDVLLTFEALKHLATLFLSLFFAEHLVAQAGLRRL 400 
WD40-rpts                                                                                      

Query      401 DSSTPPTMASTGVQRCLFCLVFMQDSFLQVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRY 480 
WD40-rpts                                                                                      

Query      481 DGLRRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKA 560 
WD40-rpts                                                                                      

Query      561 CSYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLLLQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQL 640 
WD40-rpts                                                                                      

Query      641 AESVDVLDEAGSTVSTVGISIILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQNPKSSEH 720 
WD40-rpts                                                                                      

Query      721 TLAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSSCQIQQLMKEPVLQDKRS 800 
WD40-rpts                                                                                      

Query      801 DHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRISFPEKELLLLIRNHLISKGLGETATVLTKEADLPMTA 880 
WD40-rpts                                                                                      

Query      881 ASHSSAFTPVTAAASPVSLPRTPRIANGIATRLGSHAAVGASAPSAPTAHPQPRPPQGPLALPGPSYAGNSPLIGRISFI 960 
WD40-rpts                                                                                      

Query      961 RERPSPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEP 1040
WD40-rpts                                                                                      

Query     1041 KQRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLY 1120
WD40-rpts                                                (_________________WD 1________________

Query     1121 NVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIA 1200
WD40-rpts      )   (__________________WD 2_________________)(_________________WD 3_____________

Query     1201 HIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIW 1280
WD40-rpts      ___)                                                                            

Query     1281 DLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDDLMEERMKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTD 1360
WD40-rpts                                                                                      

Query     1361 TKDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEED 1440
WD40-rpts                                                                                      

Query     1441 DNNENAGEDGDNDFSPSDEELANLLEEGEDGEDEDSDADEEVELILGDTDSSDNSDLEDDIILSLNE 1507
WD40-rpts                                                                         



3 WD40-repeats found in QUERY=ENSP00000273612 (Len=1507):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10  1083-1121     6.03  363.73  0.00078       25.0%     50.56
  WD 2:  Seg 14  1125-1165     5.17  328.30  0.00234       22.5%     48.94
  WD 3:  Seg 18  1166-1204     5.00  321.00  0.00294       15.0%     44.27
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1 1083-1121   ISVFREANEDESGFTCCAFSARERFLMLGT--CTGQLKLYN
   WD 2 1125-1165   GQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWG
   WD 3 1166-1204   MKSVFDMKHSFTEDHYVEFSKHSQDRVIGT--KGDIAHIYD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGS--EDGTIKVWD


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Last modified: 09 Jan 2019