Input parameters:
Query = ENSP00000272881 (Len=367)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000272881, Len=367):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFS 80
WD40-rpts (_________________WD 1_________________) (_________________WD
Query 81 LATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKGHEGSVA 160
WD40-rpts 2________________) (_________________WD 3________________) (______________
Query 161 CLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLE 240
WD40-rpts ___WD 4________________)(___________________WD 5__________________)
Query 241 SDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATFH 320
WD40-rpts (_________________WD 6_________________) (_______
Query 321 EGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH 367
WD40-rpts __________WD 7________________)
7 WD40-repeats found in QUERY=ENSP00000272881 (Len=367):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 13-52 8.16 451.72 5.1e-05 22.5% 51.94
WD 2: Seg 5 61-99 8.21 453.64 4.8e-05 17.5% 55.21
WD 3: Seg 9 102-140 7.81 437.14 8.0e-05 15.0% 55.62
WD 4: Seg 13 146-184 9.55 509.21 8.5e-06 32.5% 55.77
WD 5: Seg 17 185-227 9.07 489.20 1.6e-05 37.5% 57.50
WD 6: Seg 24 263-302 6.51 383.64 0.00042 10.0% 39.49
WD 7: Seg 28 313-351 8.35 459.64 4.0e-05 20.0% 55.90
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 13-52 RP---VLLSKIEGHQDAVTAALLIPKEDGVITASEDNGAVMEF
WD 2 61-99 -M---NFIKTYPAHQNRVSAIIFSLATEWVISTGHDKCVSWMC
WD 3 102-140 -S---GNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLK
WD 4 146-184 -C---SVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWD
WD 5 185-227 IGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWN
WD 6 263-302 TL---GLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCD
WD 7 313-351 -R---TSLATFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWD
WD40 Template TG---ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD