WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000272881    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000272881 (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000272881, Len=367):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEIHSRPQSSRPVLLSKIEGHQDAVTAALLIPKEDGVITASEDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFS 80  
WD40-rpts                  (_________________WD 1_________________)        (_________________WD

Query       81 LATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKGHEGSVA 160 
WD40-rpts       2________________)  (_________________WD 3________________)     (______________

Query      161 CLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLE 240 
WD40-rpts      ___WD 4________________)(___________________WD 5__________________)             

Query      241 SDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATFH 320 
WD40-rpts                            (_________________WD 6_________________)          (_______

Query      321 EGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH 367 
WD40-rpts      __________WD 7________________)                



7 WD40-repeats found in QUERY=ENSP00000272881 (Len=367):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       8.16  451.72  5.1e-05       22.5%     51.94
  WD 2:  Seg  5    61-99       8.21  453.64  4.8e-05       17.5%     55.21
  WD 3:  Seg  9   102-140      7.81  437.14  8.0e-05       15.0%     55.62
  WD 4:  Seg 13   146-184      9.55  509.21  8.5e-06       32.5%     55.77
  WD 5:  Seg 17   185-227      9.07  489.20  1.6e-05       37.5%     57.50
  WD 6:  Seg 24   263-302      6.51  383.64  0.00042       10.0%     39.49
  WD 7:  Seg 28   313-351      8.35  459.64  4.0e-05       20.0%     55.90
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   13-52     RP---VLLSKIEGHQDAVTAALLIPKEDGVITASEDNGAVMEF
   WD 2   61-99     -M---NFIKTYPAHQNRVSAIIFSLATEWVISTGHDKCVSWMC
   WD 3  102-140    -S---GNMLGRHFFTSWASCLQYDFDTQYAFVGDYSGQITLLK
   WD 4  146-184    -C---SVITTLKGHEGSVACLWWDPIQRLLFSGASDNSIIMWD
   WD 5  185-227    IGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWN
   WD 6  263-302    TL---GLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCD
   WD 7  313-351    -R---TSLATFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWD

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019