WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000269814    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000269814 (Len=751)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000269814, Len=751):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEH 80  
WD40-rpts                                                                            (_________

Query       81 HEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFS 160 
WD40-rpts      ________WD 1________________)         (________________WD 2________________)    

Query      161 RVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQ 240 
WD40-rpts                                                                                      

Query      241 FYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNN 320 
WD40-rpts                                                                                      

Query      321 IFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQ 400 
WD40-rpts                                          (_________________WD 3________________)     

Query      401 TMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEVGLALRHLLFLLEY 480 
WD40-rpts                                                                                      

Query      481 CMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTL 560 
WD40-rpts                                                                                      

Query      561 KSLLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQVAMRA 640 
WD40-rpts                                                                                      

Query      641 QRASRTRRWWMNAACCPASCLSPAWTGCQPATAWLAACSPSSPFVCSLAGRPRCLAVLPPCSSTASPGPQASPRSTTCGG 720 
WD40-rpts                                                                                      

Query      721 CTLALAPRRNARPAPGAAVSPCSSRPTEPRR 751 
WD40-rpts                                     



3 WD40-repeats found in QUERY=ENSP00000269814 (Len=751):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    71-109      7.33  417.61  0.00015       30.0%     48.72
  WD 2:  Seg  9   119-156      2.94  236.03  0.04029       12.5%     34.34
  WD 3:  Seg 22   357-395      3.33  252.13  0.02464       17.5%     29.41
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   71-109    WDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWS
   WD 2  119-156    -ESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFG
   WD 3  357-395    PKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVH

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019