Input parameters:
Query = ENSP00000269814 (Len=751)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000269814, Len=751):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEH 80
WD40-rpts (_________
Query 81 HEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFS 160
WD40-rpts ________WD 1________________) (________________WD 2________________)
Query 161 RVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQ 240
WD40-rpts
Query 241 FYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNN 320
WD40-rpts
Query 321 IFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQ 400
WD40-rpts (_________________WD 3________________)
Query 401 TMAVFYSSAAPRPVDEPAMKRPRTAGPAVHLKAMQLSWTSLALVGIDSHGKLSVLRLSPSMGHPLEVGLALRHLLFLLEY 480
WD40-rpts
Query 481 CMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTL 560
WD40-rpts
Query 561 KSLLRPHFLNTPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQVAMRA 640
WD40-rpts
Query 641 QRASRTRRWWMNAACCPASCLSPAWTGCQPATAWLAACSPSSPFVCSLAGRPRCLAVLPPCSSTASPGPQASPRSTTCGG 720
WD40-rpts
Query 721 CTLALAPRRNARPAPGAAVSPCSSRPTEPRR 751
WD40-rpts
3 WD40-repeats found in QUERY=ENSP00000269814 (Len=751):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 71-109 7.33 417.61 0.00015 30.0% 48.72
WD 2: Seg 9 119-156 2.94 236.03 0.04029 12.5% 34.34
WD 3: Seg 22 357-395 3.33 252.13 0.02464 17.5% 29.41
Multiple sequence alignment of 3 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 71-109 WDLHSIPSEHHEAITCLEWDQSGSRLLSADADGQIKCWS
WD 2 119-156 -ESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFG
WD 3 357-395 PKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVH
WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD