WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000267973    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000267973 (Len=305)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000267973, Len=305):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAA 80  
WD40-rpts          (___________________WD 1___________________)(___________________WD 2________

Query       81 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 160 
WD40-rpts      ___________)   (_________________WD 3________________)   (_________________WD 4_

Query      161 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 240 
WD40-rpts      _______________)   (_________________WD 5________________)   (_________________W

Query      241 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI 305 
WD40-rpts      D 6________________)   (_________________WD 7________________)   



7 WD40-repeats found in QUERY=ENSP00000267973 (Len=305):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-48       8.37  460.28  3.9e-05       30.0%     54.68
  WD 2:  Seg  5    49-92       9.14  492.01  1.5e-05       35.0%     54.98
  WD 3:  Seg  9    96-134      9.46  505.45  9.6e-06       20.0%     56.50
  WD 4:  Seg 13   138-176     10.09  531.32  4.3e-06       37.5%     55.02
  WD 5:  Seg 17   180-218     10.86  563.38  1.6e-06       47.5%     56.99
  WD 6:  Seg 21   222-260     10.64  554.07  2.1e-06       47.5%     57.19
  WD 7:  Seg 25   264-302      9.58  510.30  8.2e-06       27.5%     52.48
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-48     YG----ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK
   WD 2   49-92     WRDERLDLQWSLEGHQLGVVSVDISHTLP----IAASSSLDAHIRLWD
   WD 3   96-134    -G----KQIKSIDAGPVDAWTLAFSPDSQ----YLATGTHVGKVNIFG
   WD 4  138-176    -G----KKEYSLDTRGKFILSIAYSPDGK----YLASGAIDGIINIFD
   WD 5  180-218    -G----KLLHTLEGHAMPIRSLTFSPDSQ----LLVTASDDGYIKIYD
   WD 6  222-260    -A----NLAGTLSGHASWVLNVAFCPDDT----HFVSSSSDKSVKVWD
   WD 7  264-302    -R----TCVHTFFDHQDQVWGVKYNGNGS----KIVSVGDDQEIHIYD

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPDGK----RLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019