WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000265745    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000265745 (Len=209)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000265745, Len=209):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKF 80  
WD40-rpts                                                (____________WD 1___________)  (______

Query       81 DVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMN 160 
WD40-rpts      ___________WD 2________________)(____________________WD 3___________________)   

Query      161 RWKSAVLHEGEGNIRSVKWRGHLIAWANNMSKKPEAWRVAKKMKSYLNN 209 
WD40-rpts                                                       



3 WD40-repeats found in QUERY=ENSP00000265745 (Len=209):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    43-71       2.97  237.54  0.03848       12.5%     42.34
  WD 2:  Seg  5    74-112      8.43  462.71  3.6e-05       20.0%     53.45
  WD 3:  Seg  9   113-157      5.62  346.92  0.00131       10.0%     38.63
Multiple sequence alignment of 3 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   43-71     ---------LQKDAASCMTVHD-------KFLALGTHYGKVYLLD
   WD 2   74-112    -GNITQKFDVSPVKINQISLDES-----GEHMGVCSEDGKVQVFG
   WD 3  113-157    LYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD-----GKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019