WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000265097    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000265097 (Len=351)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000265097, Len=351):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVPAAAMGPSALGQSGPGSMAPWCSVSSGPSRYVLGMQELFRGHSKTREFLAHSAKVHSVAWSCDGRRLASGSFDKTAS 80  
WD40-rpts      (_________________WD 1_________________)    (_________________WD 2______________

Query       81 VFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGN 160 
WD40-rpts      __)(____________________WD 3___________________)   (________________WD 4________

Query      161 KDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFA 240 
WD40-rpts      ________)  (_________________WD 5________________)   (_________________WD 6_____

Query      241 TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRP 320 
WD40-rpts      ___________)   (_________________WD 7________________)   (________________WD 8__

Query      321 LLAFACDDKDGKYDSSREAGTVKLFGLPNDS 351 
WD40-rpts      ______________)                



8 WD40-repeats found in QUERY=ENSP00000265097 (Len=351):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       4.12  284.79  0.00901        7.5%     33.08
  WD 2:  Seg  4    45-83       9.26  496.97  1.2e-05       40.0%     54.75
  WD 3:  Seg  8    84-128      7.63  429.83  0.00010       27.5%     54.83
  WD 4:  Seg 12   132-169      8.12  450.27  5.3e-05       22.5%     54.94
  WD 5:  Seg 16   172-210      7.93  442.10  6.8e-05       12.5%     53.59
  WD 6:  Seg 20   214-252      9.83  520.83  5.9e-06       27.5%     56.19
  WD 7:  Seg 24   256-294      9.66  513.87  7.4e-06       40.0%     56.64
  WD 8:  Seg 28   298-335      7.00  403.76  0.00023       17.5%     56.37
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-40     MAV----PAAAMGPSALGQSGPGSMAPW-CSVSSGPSRYVLGMQE
   WD 2   45-83     -HS----KTREFLAHSAKVHSVAWSCDG-RRLASGSFDKTASVFL
   WD 3   84-128    LEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWD
   WD 4  132-169    -TK----CIATVNTKGENI-NICWSPDG-QTIAVGNKDDVVTFID
   WD 5  172-210    -TH----RSKAEEQFKFEVNEISWNNDN-NMFFLTNGNGCINILS
   WD 6  214-252    -LK----PVQSINAHPSNCICIKFDPMG-KYFATGSADALVSLWD
   WD 7  256-294    -LV----CVRCFSRLDWPVRTLSFSHDG-KMLASASEDHFIDIAE
   WD 8  298-335    -GD----KLWEVQCESP-TFTVAWHPKR-PLLAFACDDKDGKYDS

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDG-KRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019