WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000263918    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000263918 (Len=780)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000263918, Len=780):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEQAGPGVFFSNNHPGAGGAKGLGPLAEAAAAGDGAAAAGAARAQYSLPGILHFLQHEWARFEVERAQWEVERAELQAQ 80  
WD40-rpts                                                                                      

Query       81 IAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDMKPPSYDSDEGNETEVQPQQNSQLMWKQGRQ 160 
WD40-rpts                                                                                      

Query      161 LLRQYLQEVGYTDTILDVKSKRVRALLGFSSDVTDREDDKNQDSVVNGTEAEVKETAMIAKSELTDSASVLDNFKFLESA 240 
WD40-rpts                                                                                      

Query      241 AADFSDEDEDDDVDGREKSVIDTSTIVRKKALPDSGEDRDTKEALKEFDFLVTSEEGDNESRSAGDGTDWEKEDQCLMPE 320 
WD40-rpts                                                                                      

Query      321 AWNVDQGVITKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRDVDELPSLQPSVGSPSRPSSSRLPEHEINRADEVEALT 400 
WD40-rpts                                                                                      

Query      401 FPPSSGKSFIMGADEALESELGLGELAGLTVANEADSLTYDIANNKDALRKTWNPKFTLRSHFDGIRALAFHPIEPVLIT 480 
WD40-rpts                  (__________________WD 1__________________)________________WD 2______

Query      481 ASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVMSSNGEQCYSGGTDGLIQGWNTTNPNIDPYDSYDPSV 560 
WD40-rpts      __________)                  (_______________WD 3______________)              (_

Query      561 LRGPLLGHTDAVWGLAYSAAHQRLLSCSADGTLRLWNTTEVAPALSVFNDTKELGIPASVDLVSSDPSHMVASFSKGYTS 640 
WD40-rpts      ________________WD 4________________)   (___________________WD 5________________

Query      641 IFNMETQQRILTLESNVDTTANSSCQINRVISHPTLPISITAHEDRHIKFYDNNTGKLIHSMVAHLEAVTSLAVDPNGLY 720 
WD40-rpts      __)          (_________________WD 6________________)   (_________________WD 7___

Query      721 LMSGSHDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIASAGADALAKVFV 780 
WD40-rpts      _____________)   (___________________WD 8__________________)



8 WD40-repeats found in QUERY=ENSP00000263918 (Len=780):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   413-454      7.06  406.49  0.00021       20.0%     41.61
  WD 2:  Seg  7   453-491      9.19  494.39  1.4e-05       32.5%     45.65
  WD 3:  Seg 11   510-544      8.46  464.09  3.5e-05       30.0%     48.88
  WD 4:  Seg 14   559-597      8.93  483.53  1.9e-05       35.0%     46.89
  WD 5:  Seg 17   601-643      5.88  357.45  0.00095       12.5%     44.99
  WD 6:  Seg 22   654-692      6.96  402.22  0.00024       20.0%     41.96
  WD 7:  Seg 25   696-734     10.09  531.44  4.3e-06       35.0%     55.64
  WD 8:  Seg 29   738-780      6.90  399.73  0.00026       22.5%     49.51
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  413-454    ADEALESELGLGE----LAGLTVAN----EADSLTYDIANNKDALRKTWN
   WD 2  453-491    -WNPKFTL--RSH----FDGIRALA----FHPIEPVLITASEDHTLKMWN
   WD 3  510-544    -----YTF--RAH----KGPVLCVV----MSSNGEQCYSGGTDGLIQGWN
   WD 4  559-597    -SVLRGPL--LGH----TDAVWGLA----YSAAHQRLLSCSADGTLRLWN
   WD 5  601-643    -VAPALSV--FND----TKELGIPASVDLVSSDPSHMVASFSKGYTSIFN
   WD 6  654-692    ESN-VDTT--ANS----SCQINRVI----SHPTLPISITAHEDRHIKFYD
   WD 7  696-734    -GKLIHSM--VAH----LEAVTSLA----VDPNGLYLMSGSHDCSIRLWN
   WD 8  738-780    -KTCIQEF--TAHRKKFEESIHDVA----FHPSKCYIASAGADALAKVFV

   WD40 Template    TGECLRTL--SGH----TSGVTSVS----FSPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019