WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSP00000263805 [Homo sapiens] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSP00000263805 (Len=1883) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSP00000263805, Len=1883): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPVGRIECPSSPSFPRDISHECRVCGVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKGEEEEEDYFDKELIQLIKQRKE 80
WD40-rpts
Query 81 QSRQDEPSNSNQEINSDDRRPQWRREDRIPYQDRESYSQPAWHHRGPPQRDWKWEKDGFNNTRKNSFPHSLRNGGGPRGR 160
WD40-rpts
Query 161 SGWHKGVAGGSSTWFHNHSNSGGGWLSNSGAVDWNHNGTGRNSSWLSEGTGGFSSWHMNNSNGNWKSSVRSTNNWNYSGP 240
WD40-rpts
Query 241 GDKFQPGRNRNSNCQMEDMTMLWNKKSNKSNKYSHDRYNWQRQENDKLGTVATYRGPSEGFTSDKFPSEGLLDFNFEQLE 320
WD40-rpts
Query 321 SQTTKQADTATSKVSGKNGSAAREKPRRWTPYPSQKTLDLQSGLKDITGNKSEMIEKPLFDFSLITTGIQEPQTDETRNS 400
WD40-rpts
Query 401 PTQKTQKEIHTGSLNHKASSDSAASFEVVRQCPTAEKPEQEHTPNKMPSLKSPLLPCPATKSLSQKQDPKNISKNTKTNF 480
WD40-rpts
Query 481 FSPGEHSNPSNKPTVEDNHGPYISKLRSSCPHVLKGNKSTFGSQKQSGDNLNDTLRKAKEVLQCHESLQNPLLSTSKSTR 560
WD40-rpts
Query 561 NYAKASRNVEESEKGSLKIEFQVHALEDESDGETSDTEKHGTKIGTLGSATTELLSGSTRTADEKEEDDRILKTSRELST 640
WD40-rpts
Query 641 SPCNPIVRQKESELQMTSAASPHPGLLLDLKTSLEDAQVDDSIKSHVSYETEGFESASLDAELQKSDISQPSGPLLPELS 720
WD40-rpts
Query 721 KLGFPASLQRDLTRHISLKSKTGVHLPEPNLNSARRIRNISGHRKSETEKESGLKPTLRQILNASRRNVNWEQVIQQVTK 800
WD40-rpts
Query 801 KKQELGKGLPRFGIEMVPLVQNEQEALDLDGEPDLSSLEGFQWEGVSISSSPGLARKRSLSESSVIMDRAPSVYSFFSEE 880
WD40-rpts
Query 881 GTGKENEPQQMVSPSNSLRAGQSQKATMHLKQEVTPRAASLRTGERAENVATQRRHSAQLSSDHIIPLMHLAKDLNSQER 960
WD40-rpts
Query 961 SIPPSENQNSQESNGEGNCLSSSASSALAISSLADAATDSSCTSGAEQNDGQSIRKKRRATGDGSSPELPSLERKNKRRK 1040
WD40-rpts
Query 1041 IKGKKERSQVDQLLNISLREEELSKSLQCMDNNLLQARAALQTAYVEVQRLLMLKQQITMEMSALRTHRIQILQGLQETY 1120
WD40-rpts
Query 1121 EPSEHPDQVPCSLTRERRNSRSQTSIDAALLPTPFFPLFLEPPSSHVSPSPTGASLQITTSPTFQTHGSVPAPDSSVQIK 1200
WD40-rpts
Query 1201 QEPMSPEQDENVNAVPPSSACNVSKELLEANREISDSCPVYPVITARLSLPESTESFHEPSQELKFSVEQRNTRNRENSP 1280
WD40-rpts
Query 1281 SSQSAGLSSINKEGEEPTKGNSGSEACTSSFLRLSFASETPLEKEPHSPADQPEQQAESTLTSAETRGSKKKKKLRKKKS 1360
WD40-rpts
Query 1361 LRAAHVPENSDTEQDVLTVKPVRKVKAGKLIKGGKVTTSTWEDSRTGREQESVRDEPDSDSSLEVLEIPNPQLEVVAIDS 1440
WD40-rpts
Query 1441 SESGEEKPDSPSKKDIWNSTEQNPLETSRSGCDEVSSTSEIGTRYKDGIPVSVAETQTVISSIKGSKNSSEISSEPGDDD 1520
WD40-rpts (______
Query 1521 EPTEGSFEGHQAAVNAIQIFGNLLYTCSADKTVRVYNLVSRKCIGVFEGHTSKVNCLLVTQTSGKNAALYTGSSDHTIRC 1600
WD40-rpts _____________WD 1___________________) (__________________WD 2_________________
Query 1601 YNVKSRECVEQLQLEDRVLCLHSRWRILYAGLANGTVVTFNIKNNKRLEIFECHGPRAVSCLATAQEGARKLLVVGSYDC 1680
WD40-rpts _) (_______________WD 3_______________) (__________________WD 4_____________
Query 1681 TISVRDARNGLLLRTLEGHSKTILCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVTACLDK 1760
WD40-rpts _____) (________________WD 5_______________) (________________WD 6__________
Query 1761 FVRVYELQSHDRLQVYGGHKDMIMCMTIHKSMIYTGCYDGSIQAVRLNLMQNYRCWWHGCSLIFGVVDHLKQHLLTDHTN 1840
WD40-rpts _____) (________________WD 7_______________)
Query 1841 PNFQTLKCRWKNCDAFFTARKGSKQDAAGHIERHAEDDSKIDS 1883
WD40-rpts
 7 WD40-repeats found in QUERY=ENSP00000263805 (Len=1883): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 13 1514-1557 5.48 341.12 0.00157 22.5% 49.89 WD 2: Seg 17 1561-1602 7.11 408.54 0.00019 32.5% 52.92 WD 3: Seg 21 1606-1641 4.26 290.52 0.00754 17.5% 50.50 WD 4: Seg 25 1645-1686 5.96 360.86 0.00085 35.0% 54.04 WD 5: Seg 29 1690-1726 6.41 379.29 0.00048 30.0% 52.62 WD 6: Seg 33 1730-1766 6.77 394.52 0.00030 32.5% 52.40 WD 7: Seg 37 1770-1806 4.79 312.56 0.00381 17.5% 52.11Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1514-1557 SEPGDDDEPTEGSFEGHQA-AVNAIQI---F--G--NLLYTCSADKTVRVYN WD 2 1561-1602 -R------KCIGVFEGHTS-KVNCLLVTQTSGKN--AALYTGSSDHTIRCYN WD 3 1606-1641 -R------ECVEQLQLED----RVLCL---HSRW--RILYAGLANGTVVTFN WD 4 1645-1686 -N------KRLEIFECHGPRAVSCLAT---AQEGARKLLVVGSYDCTISVRD WD 5 1690-1726 -G------LLLRTLEGHSK-TILCMKV---VND----LVFSGSSDQSVHAHN WD 6 1730-1766 -G------ELVRIYKGHNH-AVTVVNI---L--G--KVMVTACLDKFVRVYE WD 7 1770-1806 -H------DRLQVYGGHKD-MIMCMTI-----HK--SMIYTGCYDGSIQAVR WD40 Template TG------ECLRTLSGHTS-GVTSVSF---SPDG--KRLVSGSEDGTIKVWD |
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