WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000263795    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000263795 (Len=626)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000263795, Len=626):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRSGAAAEKADSRQRPQMKVNEYKENQNIAYVSLRPAQTTVLIKTAKVYLAPFSLSNYQLDQLMCPKSLSEKNSNNEVA 80  
WD40-rpts                                                                                      

Query       81 CKKTKIKKTCRRIIPPKMKNTSSKAESTLQNSSSAVHTESNKLQPKRTADAMNLSVDVESSQDGDSDEDTTPSLDFSGLS 160 
WD40-rpts                                                                                      

Query      161 PYERKRLKNISENADFFASLQLSESAARLREMIEKRQPPKSKRKKPKRENGIGCRRSMRLLKVDPSGVSLPAAPTPPTLV 240 
WD40-rpts                                                                                      

Query      241 ADETPLLPPGPLEMTSENQEDNNERFKGFLHTWAGMSKPSSKNTEKGLSSIKSYKANLNGMVISEDTVYKVTTGPIFSMA 320 
WD40-rpts                                                             (_____________________WD 

Query      321 LHPSETRTLVAVGAKFGQVGLCDLTQQPKEDGVYVFHPHSQPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAIFEEVYR 400 
WD40-rpts      1_____________________)      (_________________WD 2_________________)   (_______

Query      401 NERSSFSSFDFLAEDASTLIVGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRDTHIYDARRL 480 
WD40-rpts      __________WD 3_________________)     (_________________WD 4________________)    

Query      481 NSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFDSSCISSKIPLLTTIRHNTFTGRWLTRFQAMWDPKQE 560 
WD40-rpts          (_________________WD 5_________________)              (_________________WD 6

Query      561 DCVIVGSMAHPRRVEIFHETGKRVHSFGGEYLVSVCSINAMHPTRYILAGGNSSGKIHVFMNEKSC 626 
WD40-rpts      _________________)   (_________________WD 7_________________)     



7 WD40-repeats found in QUERY=ENSP00000263795 (Len=626):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   296-343      4.82  313.85  0.00366       15.0%     45.99
  WD 2:  Seg  8   350-389      7.05  405.84  0.00021       27.5%     51.92
  WD 3:  Seg 12   393-432      6.54  384.99  0.00040       22.5%     56.17
  WD 4:  Seg 16   438-476      6.63  388.65  0.00036       10.0%     47.79
  WD 5:  Seg 19   485-524      7.79  436.58  8.1e-05       32.5%     47.78
  WD 6:  Seg 24   539-578      3.79  271.13  0.01373        5.0%     11.42
  WD 7:  Seg 27   582-621      5.62  346.78  0.00132       20.0%     47.92
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  296-343    ANLNGMVISEDTVYKVTTGPIFSM-ALHPSETRTLVAVGAKFGQVGLCD
   WD 2  350-389    -E------DGVYVFHPHSQPVSCL-YFSP-ANPAHILSLSYDGTLRCGD
   WD 3  393-432    -A------IFEEVYRNERSSFSSF-DFLA-EDASTLIVGHWDGNMSLVD
   WD 4  438-476    -T------SYEKLTSSSMGKIRTV-HVHP--VHRQYFITAGLRDTHIYD
   WD 5  485-524    -S------QPLISLTEHTKSIASA-YFSP-LTGNRVVTTCADCNLRIFD
   WD 6  539-578    RH------NTFTGRWLTRFQAMWD-PKQE--DCVIVGSMAHPRRVEIFH
   WD 7  582-621    -K------RVHSFGGEYLVSVCSINAMHP--TRYILAGGNSSGKIHVFM

   WD40 Template    TG------ECLRTLSGHTSGVTSV-SFSP--DGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019