Input parameters:
Query = ENSP00000263694 (Len=357)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000263694, Len=357):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGST 80
WD40-rpts (_________________WD 1________________)(_______________WD 2__
Query 81 LASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPA 160
WD40-rpts _____________) (_________________WD 3________________) (_________________WD
Query 161 RRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTG 240
WD40-rpts 4_________________)(__________________WD 5_________________) (_______________
Query 241 LSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRIL 320
WD40-rpts __WD 6________________) (___________________WD 7__________________) (___
Query 321 YKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ 357
WD40-rpts ______________WD 8________________)
8 WD40-repeats found in QUERY=ENSP00000263694 (Len=357):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 20-58 4.71 309.29 0.00422 10.0% 19.74
WD 2: Seg 5 59-94 8.97 485.04 1.8e-05 32.5% 49.93
WD 3: Seg 9 99-137 9.79 518.94 6.3e-06 37.5% 57.49
WD 4: Seg 13 141-180 9.33 500.14 1.1e-05 47.5% 55.21
WD 5: Seg 17 181-221 8.30 457.72 4.2e-05 30.0% 55.43
WD 6: Seg 21 225-263 10.27 539.08 3.4e-06 37.5% 53.37
WD 7: Seg 25 271-313 8.30 457.59 4.2e-05 32.5% 56.90
WD 8: Seg 29 317-355 9.49 506.77 9.2e-06 27.5% 52.64
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 20-58 -QR-HELLLGAGS----GPGAGQQQATPGALL-QAGPPRCSSLQAP
WD 2 59-94 -----IMLLSGHE----GEVYCCKFHPNGSTL-ASAGFDRLILLWN
WD 3 99-137 -CD-NYATLKGHS----GAVMELHYNTDGSML-FSASTDKTVAVWD
WD 4 141-180 -GE-RVKRLKGHT----SFVNSCYPARRGPQLVCTGSDDGTVKLWD
WD 5 181-221 IRKKAAIQTFQNT----YQVLAVTFNDTSDQI-ISGGIDNDIKVWD
WD 6 225-263 -NK-LTYTMRGHA----DSVTGLSLSSEGSYL-LSNAMDNTVRVWD
WD 7 271-313 -ER-CVKIFQGNVHNFEKNLLRCSWSPDGSKI-AAGSADRFVYVWD
WD 8 317-355 -RR-ILYKLPGHA----GSINEVAFHPDEPII-ISASSDKRLYMGE
WD40 Template TGE-CLRTLSGHT----SGVTSVSFSPDGKRL-VSGSEDGTIKVWD