WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000263694    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000263694 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000263694, Len=357):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGST 80  
WD40-rpts                         (_________________WD 1________________)(_______________WD 2__

Query       81 LASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPA 160 
WD40-rpts      _____________)    (_________________WD 3________________)   (_________________WD

Query      161 RRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTG 240 
WD40-rpts       4_________________)(__________________WD 5_________________)   (_______________

Query      241 LSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRIL 320 
WD40-rpts      __WD 6________________)       (___________________WD 7__________________)   (___

Query      321 YKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ 357 
WD40-rpts      ______________WD 8________________)  



8 WD40-repeats found in QUERY=ENSP00000263694 (Len=357):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    20-58       4.71  309.29  0.00422       10.0%     19.74
  WD 2:  Seg  5    59-94       8.97  485.04  1.8e-05       32.5%     49.93
  WD 3:  Seg  9    99-137      9.79  518.94  6.3e-06       37.5%     57.49
  WD 4:  Seg 13   141-180      9.33  500.14  1.1e-05       47.5%     55.21
  WD 5:  Seg 17   181-221      8.30  457.72  4.2e-05       30.0%     55.43
  WD 6:  Seg 21   225-263     10.27  539.08  3.4e-06       37.5%     53.37
  WD 7:  Seg 25   271-313      8.30  457.59  4.2e-05       32.5%     56.90
  WD 8:  Seg 29   317-355      9.49  506.77  9.2e-06       27.5%     52.64
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   20-58     -QR-HELLLGAGS----GPGAGQQQATPGALL-QAGPPRCSSLQAP
   WD 2   59-94     -----IMLLSGHE----GEVYCCKFHPNGSTL-ASAGFDRLILLWN
   WD 3   99-137    -CD-NYATLKGHS----GAVMELHYNTDGSML-FSASTDKTVAVWD
   WD 4  141-180    -GE-RVKRLKGHT----SFVNSCYPARRGPQLVCTGSDDGTVKLWD
   WD 5  181-221    IRKKAAIQTFQNT----YQVLAVTFNDTSDQI-ISGGIDNDIKVWD
   WD 6  225-263    -NK-LTYTMRGHA----DSVTGLSLSSEGSYL-LSNAMDNTVRVWD
   WD 7  271-313    -ER-CVKIFQGNVHNFEKNLLRCSWSPDGSKI-AAGSADRFVYVWD
   WD 8  317-355    -RR-ILYKLPGHA----GSINEVAFHPDEPII-ISASSDKRLYMGE

   WD40 Template    TGE-CLRTLSGHT----SGVTSVSFSPDGKRL-VSGSEDGTIKVWD


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Last modified: 09 Jan 2019