WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000262942    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000262942 (Len=370)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000262942, Len=370):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWS 80  
WD40-rpts      (_______________WD 1_______________)(___________________WD 2___________________)

Query       81 QKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAG 160 
WD40-rpts           (_________________WD 3________________) (____________________WD 4__________

Query      161 SCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVS 240 
WD40-rpts      _________)                             (______________WD 5_____________)   (____

Query      241 TLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALE 320 
WD40-rpts      ____________WD 6________________)                                        (______

Query      321 TLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRIM 370 
WD40-rpts      _____________WD 7__________________)              



7 WD40-repeats found in QUERY=ENSP00000262942 (Len=370):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       7.12  408.83  0.00019        5.0%     37.52
  WD 2:  Seg  4    37-80       8.66  472.47  2.7e-05       22.5%     53.98
  WD 3:  Seg  8    86-124      7.22  412.83  0.00017       20.0%     52.91
  WD 4:  Seg 12   126-170      8.19  452.95  4.9e-05       25.0%     53.71
  WD 5:  Seg 17   200-232      7.85  438.97  7.5e-05       37.5%     48.26
  WD 6:  Seg 20   236-273      6.86  397.93  0.00027       20.0%     55.00
  WD 7:  Seg 26   314-356      6.40  379.12  0.00048       22.5%     45.78
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-36     -------------MSLHQFLLEPITCHAW----NRDRTQIALSPNNHEVHIYK
   WD 2   37-80     KNGSQWV-----KAHELKEHNGHITGIDW----APKSDRIVTCGADRNAYVWS
   WD 3   86-124    -W----K-----PTLVILRINRAATFVKW----SPLENKFAVGSGARLISVCY
   WD 4  126-170    ES----ENDWWVSKHIKKPIRSTVLSLDW----HPNNVLLAAGSCDFKCRVFS
   WD 5  200-232    ----------------GSGTGGWVHGVSF----SASGSRLAWVSHDSTVSVAD
   WD 6  236-273    -S----V-----QVSTLKTEFLPLLSVSF----VSENSVVAAGH-DCCPMLFN
   WD 7  314-356    -D----R-----NTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD

   WD40 Template    TG----E-----CLRTLSGHTSGVTSVSF----SPDGKRLVSGSEDGTIKVWD


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Last modified: 09 Jan 2019