WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000262144    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000262144 (Len=974)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000262144, Len=974):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAARWSSENVVVEFRDSQATAMSVDCLGQHAVLSGRRFLYIVNLDAPFEGHRKISRQSKWDIGAVQWNPHDSFAHYFAAS 80  
WD40-rpts          (_________________WD 1________________)     (__________________WD 2_________

Query       81 SNQRVDLYKWKDGSGEVGTTLQGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTRKPTVALSAVAGASQVKWNKKN 160 
WD40-rpts      ________)     (_________________WD 3_________________)   (_________________WD 4_

Query      161 ANCLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKA 240 
WD40-rpts      _______________)    (_________________WD 5_________________)   (________________

Query      241 RYTPFSNGLVTVMVPQLRRENSLLLWNVFDLNTPVHTFVGHDDVVLEFQWRKQKEGSKDYQLVTWSRDQTLRMWRVDSQM 320 
WD40-rpts      ___WD 6___________________)    (___________________WD 7___________________)(____

Query      321 QRLCANDILDGVDEFIESISLLPEPEKTLHTEDTDHQHTASHGEEEALKEDPPRNLLEERKSDQLGLPQTLQQEFSLINV 400 
WD40-rpts      _________________WD 8____________________)                                      

Query      401 QIRNVNVEMDAADRSCTVSVHCSNHRVKMLVKFPAQYPNNAAPSFQFINPTTITSTMKAKLLKILKDTALQKVKRGQSCL 480 
WD40-rpts                                                                                      

Query      481 EPCLRQLVSCLESFVNQEDSASSNPFALPNSVTPPLPTFARVTTAYGSYQDANIPFPRTSGARFCGAGYLVYFTRPMTMH 560 
WD40-rpts                                                                                      

Query      561 RAVSPTEPTPRSLSALSAYHTGLIAPMKIRTEAPGNLRLYSGSPTRSEKEQVSISSFYYKERKSRRWKSKREGSDSGNRQ 640 
WD40-rpts                                                                                      

Query      641 IKAAGKVIIQDIACLLPVHKSLGELYILNVNDIQETCQKNAASALLVGRKDLVQVWSLATVATDLCLGPKSDPDLETPWA 720 
WD40-rpts                                                                                      

Query      721 RHPFGRQLLESLLAHYCRLRDVQTLAMLCSVFEAQSRPQGLPNPFGPFPNRSSNLVVSHSRYPSFTSSGSCSSMSDPGLN 800 
WD40-rpts                                                                                      

Query      801 TGGWNIAGREAEHLSSPWGESSPEELRFGSLTYSDPRERERDQHDKNKRLLDPANTQQFDDFKKCYGEILYRWGLREKRA 880 
WD40-rpts                                                                                      

Query      881 EVLKFVSCPPDPHKGIEFGVYCSHCRSEVRGTQCAICKGFTFQCAICHVAVRGSSNFCLTCGHGGHTSHMMEWFRTQEVC 960 
WD40-rpts                                                                                      

Query      961 PTGCGCHCLLESTF 974 
WD40-rpts                    



8 WD40-repeats found in QUERY=ENSP00000262144 (Len=974):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-43       3.52  259.92  0.01940       12.5%     46.31
  WD 2:  Seg  5    49-89       3.17  245.76  0.02994        7.5%     48.75
  WD 3:  Seg  9    95-134      7.41  420.64  0.00013       35.0%     54.10
  WD 4:  Seg 13   138-176      7.07  406.77  0.00021       17.5%     51.58
  WD 5:  Seg 17   181-220      7.33  417.54  0.00015       27.5%     48.82
  WD 6:  Seg 21   224-267      4.60  304.87  0.00484       12.5%     48.54
  WD 7:  Seg 25   272-315      6.47  381.76  0.00045       25.0%     54.93
  WD 8:  Seg 29   316-362      4.30  292.40  0.00712       20.0%     33.98
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    5-43     WSSENV------VVEFRDSQATAMSVDC-LG-Q-----H-AVLS-----G-RRFLYIVN
   WD 2   49-89     -EGHRK------ISRQSKWDIGAVQWNP-HD-S---FAH-YFAA-----SSNQRVDLYK
   WD 3   95-134    -GEVGT------TLQGHTRVISDLDWAVFEP-D-----L-LVTS-----SVDTYIYIWD
   WD 4  138-176    -TRKPT------VALSAVAGASQVKWNK-KN-A-----N-CLAT-----SHDGDVRIWD
   WD 5  181-220    -STAVE------YLAAHLSKIHGLDWHP-DS-E-----HILATS-----SQDNSVKFWD
   WD 6  224-267    -PRKYL------NILPCQVPVWKARYTP-FS-N-----G-LVTVMVPQLRRENSLLLWN
   WD 7  272-315    -NTPVH------TFVGHDDVVLEFQWRK-QK-EGSKDYQ-LVTW-----SRDQTLRMWR
   WD 8  316-362    VDSQMQRLCANDILDGVDEFIESISLLP-EPEK-----T-LHTE-----DTDHQHTASH

   WD40 Template    TGECLR------TLSGHTSGVTSVSFSP-DG-K-----R-LVSG-----SEDGTIKVWD


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Last modified: 09 Jan 2019