WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000262124    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000262124 (Len=360)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000262124, Len=360):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFD 80  
WD40-rpts      (_________________WD 1_________________)(_____________________WD 2______________

Query       81 RTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS 160 
WD40-rpts      ______)               (__________________WD 3_________________)        (________

Query      161 CKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAI 240 
WD40-rpts      ___________WD 4___________________)        (_____________________WD 5___________

Query      241 ATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILK 320 
WD40-rpts      __________)                (_________________WD 6________________)      (_______

Query      321 GNGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGRKHS 360 
WD40-rpts      __________WD 7________________)         



7 WD40-repeats found in QUERY=ENSP00000262124 (Len=360):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40      10.61  552.77  2.2e-06       30.0%     55.30
  WD 2:  Seg  5    41-87       7.71  433.35  9.0e-05       32.5%     53.61
  WD 3:  Seg 10   103-143      7.04  405.48  0.00021       30.0%     58.41
  WD 4:  Seg 15   152-195      5.53  343.03  0.00148       17.5%     28.22
  WD 5:  Seg 19   204-251      6.96  402.35  0.00024       22.5%     49.54
  WD 6:  Seg 23   268-306      8.29  457.15  4.3e-05       27.5%     56.11
  WD 7:  Seg 25   313-351      4.50  300.62  0.00552       15.0%     19.78
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-40     MF----V-----ARSIAADHKDLIHDVSFDFH----GRR-----MATCSSDQSVKVWD
   WD 2   41-87     KS----ESGDWHCTASWKTHSGSVWRVTWAHP--EFGQV-----LASCSFDRTAAVWE
   WD 3  103-143    -W----V-----KRTTLVDSRTSVTDVKFAPK--HMGLM-----LATCSADGIVRIYE
   WD 4  152-195    QW----S------LQHEISCKLSCSCISWNPS----SSRAHSPMIAVGSDDSSPNAMA
   WD 5  204-251    ENTRKYA-----KAETLMTVTDPVHDIAFAPNLGRSFHI-----LAIATKDVRIFTLK
   WD 6  268-306    -I----H-----IVAQFDNHNSQVWRVSWNIT----GTV-----LASSGDDGCVRLWK
   WD 7  313-351    -W----K-----CTGILKGNGSPVNGSSQQGT----SNP-----SLGSTIPSLQNSLN

   WD40 Template    TG----E-----CLRTLSGHTSGVTSVSFSPD----GKR-----LVSGSEDGTIKVWD


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Last modified: 09 Jan 2019