WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000261861    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000261861 (Len=480)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000261861, Len=480):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVTKMSWRPQYRSSKFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNTRFLAIVTESAGGGSFLVIPLEQTGRIEPNY 80  
WD40-rpts                           (______________________WD 1_____________________)      (___

Query       81 PKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDY 160 
WD40-rpts      ______________WD 2_________________)          (_________________WD 3____________

Query      161 KVLIWNLDVGEPVKMIDCHTDVILCMSFNTDGSLLTTTCKDKKLRVIEPRSGRVLQEANCKNHRVNRVVFLGNMKRLLTT 240 
WD40-rpts      _____)   (_________________WD 4________________)   (___________________WD 5_____

Query      241 GVSRWNTRQIALWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQK 320 
WD40-rpts      _____________)      (_________________WD 6________________)(___________________W

Query      321 GLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEG 400 
WD40-rpts      D 7__________________)                                                          

Query      401 YKKSSKMVFKAPIKEKKSVVVNGIDLLENVPPRTENELLRMFFRQQDEIRRLKEELAQKDIRIRQLQLELKNLRNSPKNC 480 
WD40-rpts                                                                                      



7 WD40-repeats found in QUERY=ENSP00000261861 (Len=480):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    22-70       3.76  270.03  0.01421       12.5%     36.86
  WD 2:  Seg  6    77-116      7.07  406.51  0.00021       22.5%     46.79
  WD 3:  Seg 10   127-166      6.79  395.07  0.00029       30.0%     52.80
  WD 4:  Seg 14   170-208      8.91  482.73  1.9e-05       27.5%     55.06
  WD 5:  Seg 18   212-254      5.80  354.31  0.00104       30.0%     41.30
  WD 6:  Seg 22   261-299      5.77  352.90  0.00109       12.5%     52.64
  WD 7:  Seg 26   300-342      4.08  283.20  0.00946       12.5%     32.77
Multiple sequence alignment of 7 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   22-70     GKV---ANREHCFDGIPITKNVHDNHFCAVNTRF-L-AIVTE----SAGGGSFLVIPL
   WD 2   77-116    -EP---NYP---------KVCGHQGNVLDIKWNPFI-DNIIA----SCSEDTSVRIWE
   WD 3  127-166    -TE---ALL---------ELHGHSRRVGLVEWHP-TTNNILF----SAGYDYKVLIWN
   WD 4  170-208    -GE---PVK---------MIDCHTDVILCMSFNT-D-GSLLT----TTCKDKKLRVIE
   WD 5  212-254    -GR---VLQ---------EANCKNHRVNRVVFLG-N-MKRLLTTGVSRWNTRQIALWD
   WD 6  261-299    -PL---IEE---------EIDGLSGLLFPFYDAD-T-HMLYL----AGKGDGNIRYYE
   WD 7  300-342    ISTEKPYLS---------YLMEFRSPAPQKGLGV-M-PKHGL----DVSACEVFRFYK

   WD40 Template    TGE---CLR---------TLSGHTSGVTSVSFSP-D-GKRLV----SGSEDGTIKVWD


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Last modified: 09 Jan 2019