Input parameters:
Query = ENSP00000261861 (Len=480)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSP00000261861, Len=480):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTVTKMSWRPQYRSSKFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNTRFLAIVTESAGGGSFLVIPLEQTGRIEPNY 80
WD40-rpts (______________________WD 1_____________________) (___
Query 81 PKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDY 160
WD40-rpts ______________WD 2_________________) (_________________WD 3____________
Query 161 KVLIWNLDVGEPVKMIDCHTDVILCMSFNTDGSLLTTTCKDKKLRVIEPRSGRVLQEANCKNHRVNRVVFLGNMKRLLTT 240
WD40-rpts _____) (_________________WD 4________________) (___________________WD 5_____
Query 241 GVSRWNTRQIALWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQK 320
WD40-rpts _____________) (_________________WD 6________________)(___________________W
Query 321 GLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEG 400
WD40-rpts D 7__________________)
Query 401 YKKSSKMVFKAPIKEKKSVVVNGIDLLENVPPRTENELLRMFFRQQDEIRRLKEELAQKDIRIRQLQLELKNLRNSPKNC 480
WD40-rpts
7 WD40-repeats found in QUERY=ENSP00000261861 (Len=480):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 22-70 3.76 270.03 0.01421 12.5% 36.86
WD 2: Seg 6 77-116 7.07 406.51 0.00021 22.5% 46.79
WD 3: Seg 10 127-166 6.79 395.07 0.00029 30.0% 52.80
WD 4: Seg 14 170-208 8.91 482.73 1.9e-05 27.5% 55.06
WD 5: Seg 18 212-254 5.80 354.31 0.00104 30.0% 41.30
WD 6: Seg 22 261-299 5.77 352.90 0.00109 12.5% 52.64
WD 7: Seg 26 300-342 4.08 283.20 0.00946 12.5% 32.77
Multiple sequence alignment of 7 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 22-70 GKV---ANREHCFDGIPITKNVHDNHFCAVNTRF-L-AIVTE----SAGGGSFLVIPL
WD 2 77-116 -EP---NYP---------KVCGHQGNVLDIKWNPFI-DNIIA----SCSEDTSVRIWE
WD 3 127-166 -TE---ALL---------ELHGHSRRVGLVEWHP-TTNNILF----SAGYDYKVLIWN
WD 4 170-208 -GE---PVK---------MIDCHTDVILCMSFNT-D-GSLLT----TTCKDKKLRVIE
WD 5 212-254 -GR---VLQ---------EANCKNHRVNRVVFLG-N-MKRLLTTGVSRWNTRQIALWD
WD 6 261-299 -PL---IEE---------EIDGLSGLLFPFYDAD-T-HMLYL----AGKGDGNIRYYE
WD 7 300-342 ISTEKPYLS---------YLMEFRSPAPQKGLGV-M-PKHGL----DVSACEVFRFYK
WD40 Template TGE---CLR---------TLSGHTSGVTSVSFSP-D-GKRLV----SGSEDGTIKVWD