WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000261837    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000261837 (Len=395)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000261837, Len=395):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MCDQTFLVNVFGSCDKCFKQRALRPVFKKSQQLSYCSTCAEIMATEGLHENETLASLKSEAESLKGKLEEERAKLHDVEL 80  
WD40-rpts                                            (_________________WD 1________________)   

Query       81 HQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 160 
WD40-rpts                    (_________________WD 2________________)   (_________________WD 3__

Query      161 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 240 
WD40-rpts      ______________)         (_________________WD 4________________)   (_____________

Query      241 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 320 
WD40-rpts      _____WD 5_________________)   (_________________WD 6________________)   (_______

Query      321 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 395 
WD40-rpts      ___________WD 7_________________)   (_________________WD 8________________)



8 WD40-repeats found in QUERY=ENSP00000261837 (Len=395):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    39-77       5.37  336.43  0.00182       17.5%     23.31
  WD 2:  Seg  4    95-133     10.09  531.49  4.3e-06       40.0%     52.64
  WD 3:  Seg  8   137-175      8.53  467.04  3.2e-05       15.0%     55.88
  WD 4:  Seg 12   185-223      8.96  484.89  1.8e-05       25.0%     53.33
  WD 5:  Seg 16   227-267      8.70  473.95  2.5e-05       35.0%     55.13
  WD 6:  Seg 20   271-309     10.25  538.18  3.5e-06       35.0%     52.73
  WD 7:  Seg 24   313-353      8.06  447.47  5.8e-05       37.5%     57.71
  WD 8:  Seg 28   357-395      9.81  519.77  6.1e-06       40.0%     50.26
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   39-77     CAEIMATEGLH--ENETLASLKSE--AESLKGKLEEE--RAKLHD
   WD 2   95-133    MKTRRTLKGHG--NKVLCMDWCKD--KRRIVSSS--QDGKVIVWD
   WD 3  137-175    TNKEHAVTMPC--TWVMACAYAPS--GCAIACGG--LDNKCSVYP
   WD 4  185-223    AAKKKSVAMHT--NYLSACSFTNS--DMQILTAS--GDGTCALWD
   WD 5  227-267    GQLLQSFHGHG--ADVLCLDLAPSETGNTFVSGG--CDKKAMVWD
   WD 6  271-309    GQCVQAFETHE--SDINSVRYYPS--GDAFASGS--DDATCRLYD
   WD 7  313-353    DREVAIYSKESIIFGASSVDFSLS--GRLLFAGY--NDYTINVWD
   WD 8  357-395    GSRVSILFGHE--NRVSTLRVSPD--GTAFCSGS--WDHTLRVWA

   WD40 Template    GECLRTLSGHT--SGVTSVSFSPD--GKRLVSGS--EDGTIKVWD


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Last modified: 09 Jan 2019