WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSP00000261015    [Homo sapiens]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSP00000261015 (Len=423)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSP00000261015, Len=423):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQLQTRFYTDNKKYAVDDVPFSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKGQFLRMPLDKHMEMENISSEEV 80  
WD40-rpts                                               (___________________WD 1_______________

Query       81 VEIEYVEKYTAPQPEQCMFHDDWISSIKGAEEWILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLS 160 
WD40-rpts      ____)     (________________WD 2_______________)  (__________________WD 3________

Query      161 ASMDQTILLWEWNVERNKVKALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKT 240 
WD40-rpts      __________)       (_________________WD 4________________)                       

Query      241 EQLGLTRTPIVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVFNCISYSPLCKRLASGSTDRH 320 
WD40-rpts                  (_____________WD 5_____________)   (________________WD 6____________

Query      321 IRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLL 400 
WD40-rpts      ____)      (_________________WD 7_________________)(__________________WD 8______

Query      401 LSGGADNKLYSYRYSPTTSHVGA 423 
WD40-rpts      ____________)          



8 WD40-repeats found in QUERY=ENSP00000261015 (Len=423):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    42-85       3.52  259.87  0.01942       10.0%     31.43
  WD 2:  Seg  6    91-127      7.08  407.28  0.00020       17.5%     40.17
  WD 3:  Seg  9   130-171      8.38  461.01  3.8e-05       35.0%     55.93
  WD 4:  Seg 13   179-217      9.30  498.91  1.2e-05       30.0%     53.35
  WD 5:  Seg 18   253-284      7.10  407.74  0.00020       42.5%     44.28
  WD 6:  Seg 21   288-325      8.47  464.45  3.4e-05       42.5%     52.46
  WD 7:  Seg 25   332-371      8.50  465.98  3.3e-05       42.5%     51.08
  WD 8:  Seg 29   372-413      6.77  394.20  0.00030       32.5%     50.77
Multiple sequence alignment of 8 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1   42-85     KDK---------NEFHKHVEFDFLI-KGQ---FLRMPLDKHMEMENISSEEVVEIEY
   WD 2   91-127    -APQ---PEQCMFHDDWISSIKGAE-EW-----ILTG----------SYDKTSRIWS
   WD 3  130-171    -GKS---IMTIVGHTDVVKDVAWVK-KDSLSCLLLSA----------SMDQTILLWE
   WD 4  179-217    -VKA---LHCCRGHAGSVDSIAVDG-SGT---KFCSG----------SWDKMLKIWS
   WD 5  253-284    ----------LSGHMEAVSSVLWS--DAE---EICSA----------SWDHTIRVWD
   WD 6  288-325    -GSL---KSTLTGNKV-FNCISYSP-LCK---RLASG----------STDRHIRLWD
   WD 7  332-371    -SLV---SLSLTSHTGWVTSVKWSPTHEQ---QLISG----------SLDNIVKLWD
   WD 8  372-413    TRSCKAPLYDLAAHEDKVLSVDWTD-TGL----LLSG----------GADNKLYSYR

   WD40 Template    TGEC---LRTLSGHTSGVTSVSFSP-DGK---RLVSG----------SEDGTIKVWD


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Last modified: 09 Jan 2019