Input parameters:

  Query = ENSMUSP00000125730 (Len=1512)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000125730, Len=1512):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTVVVHVDSKAELTTLLEQWEKDHGSGQDMVPILTRMSELIEKETEEYRKGDPDPFDDRHPGRADPECMLGHLLRILFK 80  
WD40-rpts                                                                                      

Query       81 NDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDI 160 
WD40-rpts                                                                                      

Query      161 AANYRDENSQLVAIVLRRLRELQLQEVALRQDSKRPSPRKLSSEPLLPLDEEAVDMDYGDMAVDVVDGEQESSRDMEISF 240 
WD40-rpts                                                                                      

Query      241 RLDSSHKTSSRVNSATKPEEGGLKKNKSAKHGDRENFRKAKQKLGFSSSDPDRVFVELSNSSWSEMSPWVIGTNYTLYPM 320 
WD40-rpts                                                                                      

Query      321 TPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMFYIDLKQTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLL 400 
WD40-rpts                                                                                      

Query      401 EIPRPSMAATGVSMCLYYLSYNQDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRYD 480 
WD40-rpts                                                                                      

Query      481 GLRRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKAC 560 
WD40-rpts                                                                                      

Query      561 SYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLLLQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQLA 640 
WD40-rpts                                                                                      

Query      641 ESVDVLDEAGSAVSTVGISIILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLSQTPKSSEHT 720 
WD40-rpts                                                                                      

Query      721 LAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSSCQIQQLMKEPVLQDKRSD 800 
WD40-rpts                                                                                      

Query      801 HVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRISFPEKELLLLIRNHLISKGLGETATVLTREADLPMTAA 880 
WD40-rpts                                                                                      

Query      881 SHSSAFTPVTAAASPVSLPRTPRIANGIASRLGSHATVGASAPSAPPAHPPPRPPQGSLPLPGPSYAGNSPLIGRISFIR 960 
WD40-rpts                                                                                      

Query      961 ERPSPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPK 1040
WD40-rpts                                                                                      

Query     1041 QRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYN 1120
WD40-rpts                                               (_________________WD 1________________)

Query     1121 VFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIAH 1200
WD40-rpts         (__________________WD 2_________________)(_________________WD 3______________

Query     1201 IYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWD 1280
WD40-rpts      __)                                                                             

Query     1281 LRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDDLLEERMKSPFGSSFRTFNATDYKPIVMFYFSATIDVKRNIF 1360
WD40-rpts                                                  (________________WD 4_______________

Query     1361 DLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEA 1440
WD40-rpts      )                                                                               

Query     1441 ELEEDDNNENAGEDGDNDFSPSDEELANLLEEGEEGEDEDSDADEEVELILGDTDSSDNSDLEDDIILSLNE 1512
WD40-rpts                                                                              

4 WD40-repeats found in QUERY=ENSMUSP00000125730 (Len=1512):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7  1082-1120     6.15  368.68  0.00067       25.0%     49.85
  WD 2:  Seg 11  1124-1164     5.14  326.95  0.00244       22.5%     48.88
  WD 3:  Seg 15  1165-1203     5.05  323.36  0.00273       15.0%     44.47
  WD 4:  Seg 27  1325-1361     4.33  293.66  0.00685       10.0%     13.74

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1082-1120   ISVFREANEDESGFTCCAFSARERFLMLGT--CTGQLKLYN
   WD 2 1124-1164   GQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWG
   WD 3 1165-1203   MKSVFDMKHSFTEDHYVEFSKHSQDRVIGT--KGDIAHIYD
   WD 4 1325-1361   --MKSPFGSSFRTFNATDYKPIVMFYFSAT--IDVKRNIFD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGS--EDGTIKVWD